25 years of the IPD‐IMGT/HLA D atabase

J Robinson, DJ Barker, SGE Marsh - Hla, 2024 - Wiley Online Library
Twenty‐five years ago, in 1998, the HLA Informatics Group of the Anthony Nolan Research
Institute released the IMGT/HLA Database. Since this time, this online resource has acted as …

Big data and deep learning for RNA biology

H Hwang, H Jeon, N Yeo, D Baek - Experimental & Molecular Medicine, 2024 - nature.com
The exponential growth of big data in RNA biology (RB) has led to the development of deep
learning (DL) models that have driven crucial discoveries. As constantly evidenced by DL …

The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered

K Abarenkov, RH Nilsson, KH Larsson… - Nucleic Acids …, 2024 - academic.oup.com
Abstract UNITE (https://unite. ut. ee) is a web-based database and sequence management
environment for molecular identification of eukaryotes. It targets the nuclear ribosomal …

MetaboLights: open data repository for metabolomics

O Yurekten, T Payne, N Tejera… - Nucleic acids …, 2024 - academic.oup.com
MetaboLights is a global database for metabolomics studies including the raw experimental
data and the associated metadata. The database is cross-species and cross-technique and …

Database resources of the national center for biotechnology information

EW Sayers, J Beck, EE Bolton, JR Brister… - Nucleic Acids …, 2023 - pmc.ncbi.nlm.nih.gov
Abstract The National Center for Biotechnology Information (NCBI) provides online
information resources for biology, including the GenBank® nucleic acid sequence database …

RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes

DH Haft, A Badretdin, G Coulouris… - Nucleic Acids …, 2024 - academic.oup.com
Abstract The Reference Sequence (RefSeq) project at the National Center for Biotechnology
Information (NCBI) contains over 315 000 bacterial and archaeal genomes and 236 million …

Ensembl 2024

PW Harrison, MR Amode… - Nucleic acids …, 2024 - academic.oup.com
Abstract Ensembl (https://www. ensembl. org) is a freely available genomic resource that has
produced high-quality annotations, tools, and services for vertebrates and model organisms …

The European nucleotide archive in 2023

D Yuan, A Ahamed, J Burgin, C Cummins… - Nucleic acids …, 2024 - academic.oup.com
Abstract The European Nucleotide Archive (ENA; https://www. ebi. ac. uk/ena) is maintained
by the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL …

Structural variation in the pangenome of wild and domesticated barley

M Jayakodi, Q Lu, H Pidon, MT Rabanus-Wallace… - Nature, 2024 - nature.com
Pangenomes are collections of annotated genome sequences of multiple individuals of a
species. The structural variants uncovered by these datasets are a major asset to genetic …

From multi-omics approaches to personalized medicine in myocardial infarction

C Zhan, T Tang, E Wu, Y Zhang, M He, R Wu… - Frontiers in …, 2023 - frontiersin.org
Myocardial infarction (MI) is a prevalent cardiovascular disease characterized by myocardial
necrosis resulting from coronary artery ischemia and hypoxia, which can lead to severe …