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The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs
RNA 3D motifs occupy places in structured RNA molecules that correspond to the hairpin,
internal and multi-helix junction “loops” of their secondary structure representations. As …
internal and multi-helix junction “loops” of their secondary structure representations. As …
Analyzing and building nucleic acid structures with 3DNA
The 3DNA software package is a popular and versatile bioinformatics tool with capabilities
to analyze, construct, and visualize three-dimensional nucleic acid structures. This article …
to analyze, construct, and visualize three-dimensional nucleic acid structures. This article …
In silico optimization of RNA–protein interactions for CRISPR-Cas13-based antimicrobials
RNA–protein interactions are crucial for diverse biological processes. In prokaryotes, RNA–
protein interactions enable adaptive immunity through CRISPR-Cas systems. These …
protein interactions enable adaptive immunity through CRISPR-Cas systems. These …
A comprehensive survey of long-range tertiary interactions and motifs in non-coding RNA structures
Understanding the 3D structure of RNA is key to understanding RNA function. RNA 3D
structure is modular and can be seen as a composition of building blocks of various sizes …
structure is modular and can be seen as a composition of building blocks of various sizes …
RMalign: an RNA structural alignment tool based on a novel scoring function RMscore
J Zheng, J ** therapeutic applications. Since the function of RNA …
Topology independent comparison of RNA 3D structures using the CLICK algorithm
RNA molecules are attractive therapeutic targets because non-coding RNA molecules have
increasingly been found to play key regulatory roles in the cell. Comparing and classifying …
increasingly been found to play key regulatory roles in the cell. Comparing and classifying …