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De novo protein design, a retrospective
Proteins are molecular machines whose function depends on their ability to achieve
complex folds with precisely defined structural and dynamic properties. The rational design …
complex folds with precisely defined structural and dynamic properties. The rational design …
Drugging membrane protein interactions
H Yin, AD Flynn - Annual review of biomedical engineering, 2016 - annualreviews.org
The majority of therapeutics target membrane proteins, accessible on the surface of cells, to
alter cellular signaling. Cells use membrane proteins to transduce signals into cells …
alter cellular signaling. Cells use membrane proteins to transduce signals into cells …
Spatial arrangement of proteins in planar and curved membranes by PPM 3.0
Cellular protrusions, invaginations, and many intracellular organelles have strongly curved
membrane regions. Transmembrane and peripheral membrane proteins that induce, sense …
membrane regions. Transmembrane and peripheral membrane proteins that induce, sense …
OPM database and PPM web server: resources for positioning of proteins in membranes
Abstract The Orientations of Proteins in Membranes (OPM) database is a curated web
resource that provides spatial positions of membrane-bound peptides and proteins of known …
resource that provides spatial positions of membrane-bound peptides and proteins of known …
Molecular code for transmembrane-helix recognition by the Sec61 translocon
Transmembrane α-helices in integral membrane proteins are recognized co-translationally
and inserted into the membrane of the endoplasmic reticulum by the Sec61 translocon. A full …
and inserted into the membrane of the endoplasmic reticulum by the Sec61 translocon. A full …
De novo design of a transmembrane Zn2+-transporting four-helix bundle
The design of functional membrane proteins from first principles represents a grand
challenge in chemistry and structural biology. Here, we report the design of a membrane …
challenge in chemistry and structural biology. Here, we report the design of a membrane …
HAPPENN is a novel tool for hemolytic activity prediction for therapeutic peptides which employs neural networks
The growing prevalence of resistance to antibiotics motivates the search for new
antibacterial agents. Antimicrobial peptides are a diverse class of well-studied membrane …
antibacterial agents. Antimicrobial peptides are a diverse class of well-studied membrane …
[Књига][B] Introduction to proteins: structure, function, and motion
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …
structure, function, and motion of proteins for students, faculty, and researchers at all levels …
modlAMP: Python for antimicrobial peptides
We have implemented the mo lecular d esign l aboratory'sa nti m icrobial p eptides package
(modlAMP), a Python-based software package for the design, classification and visual …
(modlAMP), a Python-based software package for the design, classification and visual …
De novo-designed transmembrane proteins bind and regulate a cytokine receptor
Transmembrane (TM) domains as simple as a single span can perform complex biological
functions using entirely lipid-embedded chemical features. Computational design has the …
functions using entirely lipid-embedded chemical features. Computational design has the …