Clinical and translational values of spatial transcriptomics

L Zhang, D Chen, D Song, X Liu, Y Zhang… - … and Targeted Therapy, 2022 - nature.com
The combination of spatial transcriptomics (ST) and single cell RNA sequencing (scRNA-
seq) acts as a pivotal component to bridge the pathological phenomes of human tissues with …

Uncovering an organ's molecular architecture at single-cell resolution by spatially resolved transcriptomics

J Liao, X Lu, X Shao, L Zhu, X Fan - Trends in biotechnology, 2021 - cell.com
Revealing fine-scale cellular heterogeneity among spatial context and the functional and
structural foundations of tissue architecture is fundamental within biological research and …

Embracing complexity in sepsis

AR Schuurman, PMA Sloot, WJ Wiersinga… - Critical Care, 2023 - Springer
Sepsis involves the dynamic interplay between a pathogen, the host response, the failure of
organ systems, medical interventions and a myriad of other factors. This together results in a …

Microbial life in slow and stopped lanes

RM Walker, VC Sanabria, H Youk - Trends in microbiology, 2024 - cell.com
Microbes in nature often lack nutrients and face extreme or widely fluctuating temperatures,
unlike microbes in growth-optimized settings in laboratories that much of the literature …

[HTML][HTML] Single-cell and spatial transcriptomics: Advances in heart development and disease applications

X Long, X Yuan, J Du - Computational and structural biotechnology journal, 2023 - Elsevier
Current transcriptomics technologies, including bulk RNA-seq, single-cell RNA sequencing
(scRNA-seq), single-nucleus RNA-sequencing (snRNA-seq), and spatial transcriptomics …

Macroscopic quorum sensing sustains differentiating embryonic stem cells

H Daneshpour, P Van den Bersselaar… - Nature chemical …, 2023 - nature.com
Cells can secrete molecules that help each other's replication. In cell cultures, chemical
signals might diffuse only within a cell colony or between colonies. A chemical signal's …

A generalizable data-driven multicellular model of pancreatic ductal adenocarcinoma

B Aguilar, DL Gibbs, DJ Reiss, M McConnell… - …, 2020 - academic.oup.com
Background Mechanistic models, when combined with pertinent data, can improve our
knowledge regarding important molecular and cellular mechanisms found in cancer. These …

From non-excitable single-cell to multicellular bioelectrical states supported by ion channels and gap junction proteins: Electrical potentials as distributed controllers

J Cervera, VP Pai, M Levin, S Mafe - Progress in biophysics and molecular …, 2019 - Elsevier
Endogenous bioelectric patterns within tissues are an important driver of morphogenesis
and a tractable component of a number of disease states. Develo** system-level …

[HTML][HTML] Modeling cell–cell communication for immune systems across space and time

H Daneshpour, H Youk - Current Opinion in Systems Biology, 2019 - Elsevier
Communicating is crucial for cells to coordinate their behaviors. Immunological processes,
involving diverse cytokines and cell types, are ideal for develo** frameworks for modeling …

Thermal resonance and cell behavior

U Lucia, G Grisolia - Entropy, 2020 - mdpi.com
From a thermodynamic point of view, living cell life is no more than a cyclic process. It starts
with the newly separated daughter cells and restarts when the next generations grow as free …