Phylogenetically novel uncultured microbial cells dominate earth microbiomes

KG Lloyd, AD Steen, J Ladau, J Yin, L Crosby - MSystems, 2018 - Am Soc Microbiol
To describe a microbe's physiology, including its metabolism, environmental roles, and
growth characteristics, it must be grown in a laboratory culture. Unfortunately, many …

Rapid shape acquisition using color structured light and multi-pass dynamic programming

L Zhang, B Curless, SM Seitz - Proceedings. First International …, 2002 - ieeexplore.ieee.org
This paper presents a color structured light technique for recovering object shape from one
or more images. The technique works by projecting a pattern of stripes of alternating colors …

[PDF][PDF] Phylogenetically novel uncultured microbial cells dominate earth microbiomes. mSystems 3: e00055-18

KG Lloyd, AD Steen, J Ladau, J Yin, L Crosby - 2018 - adsteen.github.io
To describe a microbe's physiology, including its metabolism, environmental roles, and
growth characteristics, it must be grown in a laboratory culture. Unfortunately, many …

Performance portability study for massively parallel computational fluid dynamics application on scalable heterogeneous architectures

S Lee, J Gounley, A Randles, JS Vetter - Journal of Parallel and Distributed …, 2019 - Elsevier
Patient-specific hemodynamic simulations have the potential to greatly improve both the
diagnosis and treatment of a variety of vascular diseases. Portability will enable wider …

Towards achieving performance portability using directives for accelerators

MG Lopez, VV Larrea, W Joubert… - … Third Workshop on …, 2016 - ieeexplore.ieee.org
In this paper we explore the performance portability of directives provided by OpenMP 4 and
OpenACC to program various types of node architectures with attached accelerators, both …

[PDF][PDF] Early experiences writing performance portable OpenMP 4 codes

VV Larrea, W Joubert, MG Lopez… - Proc. Cray User Group …, 2016 - cug.org
In this paper, we evaluate the recently available directives in OpenMP 4 to parallelize a
computational kernel using both the traditional shared memory approach and the newer …

Integrating apache spark into pbs-based hpc environments

T Baer, P Peltz, J Yin, E Begoli - Proceedings of the 2015 XSEDE …, 2015 - dl.acm.org
This paper describes an effort at the University of Tennessee's National Institute for
Computational Sciences (NICS) to integrate Apache Spark into the widely used TORQUE …

Acceleration of the WRF Monin–Obukhov–Janjic surface layer parameterization scheme on an MIC-based platform for weather forecast

M Huang, B Huang, HLA Huang - IEEE Journal of Selected …, 2017 - ieeexplore.ieee.org
A state-of-the-art numerical weather prediction (NWP) model, comprising weather research
and forecast (WRF) model and analysis techniques, has been extensively exercised for …

Many-core needs fine-grained scheduling: A case study of query processing on Intel Xeon Phi processors

X Cheng, B He, M Lu, CT Lau - Journal of Parallel and Distributed …, 2018 - Elsevier
Emerging many-core processors feature very high memory bandwidth and computational
power. For example, Intel Xeon Phi many-core processors of the Knights Corner (KNC) and …

IMPACC: a tightly integrated MPI+ OpenACC framework exploiting shared memory parallelism

J Kim, S Lee, JS Vetter - Proceedings of the 25th ACM International …, 2016 - dl.acm.org
We propose IMPACC, an MPI+ OpenACC framework for heterogeneous accelerator
clusters. IMPACC tightly integrates MPI and OpenACC, while exploiting the shared memory …