Generic, hierarchical framework for massively parallel Wang-Landau sampling
We introduce a parallel Wang-Landau method based on the replica-exchange framework for
Monte Carlo simulations. To demonstrate its advantages and general applicability for …
Monte Carlo simulations. To demonstrate its advantages and general applicability for …
Scalable replica-exchange framework for Wang-Landau sampling
We investigate a generic, parallel replica-exchange framework for Monte Carlo simulations
based on the Wang-Landau method. To demonstrate its advantages and general …
based on the Wang-Landau method. To demonstrate its advantages and general …
[BOOK][B] Thermodynamics and statistical mechanics of macromolecular systems
M Bachmann - 2014 - books.google.com
The structural mechanics of proteins that fold into functional shapes, polymers that
aggregate and form clusters, and organic macromolecules that bind to inorganic matter can …
aggregate and form clusters, and organic macromolecules that bind to inorganic matter can …
Effect of grafting density on the adsorption of end-grafted polymer chains
HK Qi, X Yang, QH Yang, MB Luo - Polymer, 2022 - Elsevier
The critical adsorption temperature (T CAP) and adsorption process of end-grafted polymer
chains with grafting density f on a homogeneous, attractive surface are studied using …
chains with grafting density f on a homogeneous, attractive surface are studied using …
A new paradigm for petascale Monte Carlo simulation: Replica exchange Wang-Landau sampling
We introduce a generic, parallel Wang-Landau method that is naturally suited to
implementation on massively parallel, petaflop supercomputers. The approach introduces a …
implementation on massively parallel, petaflop supercomputers. The approach introduces a …
Effects of knots on protein folding properties
This work explores the impact of knots, knot depth and motif of the threading terminus in
protein folding properties (kinetics, thermodynamics and mechanism) via extensive Monte …
protein folding properties (kinetics, thermodynamics and mechanism) via extensive Monte …
Height switching in mixed polymer brushes with polymers of different stiffnesses
X Yang, JH Huang, IV Mikhailov, AA Polotsky… - …, 2020 - ACS Publications
The conformational properties of mixed polymer brushes made of polymers with different
stiffnesses are studied by using Monte Carlo computer simulations and the Scheutjens …
stiffnesses are studied by using Monte Carlo computer simulations and the Scheutjens …
Effect of single-site mutations on hydrophobic-polar lattice proteins
We developed a heuristic method for determining the ground-state degeneracy of
hydrophobic-polar (HP) lattice proteins, based on Wang-Landau and multicanonical …
hydrophobic-polar (HP) lattice proteins, based on Wang-Landau and multicanonical …
Study on the adsorption process of a semi-flexible polymer onto homogeneous attractive surfaces
X Yang, QH Yang, Y Fu, F Wu, JH Huang, MB Luo - Polymer, 2019 - Elsevier
The dynamic adsorption process of a semi-flexible polymer onto homogeneous attractive
surfaces is studied using dynamic Monte Carlo simulations. The adsorption time increases …
surfaces is studied using dynamic Monte Carlo simulations. The adsorption time increases …
Designs to improve capability of neural networks to make structural predictions
TY Wang, JF Li, HD Zhang, JZY Chen - Chinese Journal of Polymer …, 2023 - Springer
A deep neural network model generally consists of different modules that play essential
roles in performing a task. The optimal design of a module for use in modeling a physical …
roles in performing a task. The optimal design of a module for use in modeling a physical …