The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology

TE Sandberg, MJ Salazar, LL Weng, BO Palsson… - Metabolic …, 2019 - Elsevier
Harnessing the process of natural selection to obtain and understand new microbial
phenotypes has become increasingly possible due to advances in culturing techniques …

Emerging and evolving concepts in gene essentiality

G Rancati, J Moffat, A Typas, N Pavelka - Nature Reviews Genetics, 2018 - nature.com
Gene essentiality is a founding concept of genetics with important implications in both
fundamental and applied research. Multiple screens have been performed over the years in …

Integrated evolutionary analysis reveals antimicrobial peptides with limited resistance

R Spohn, L Daruka, V Lázár, A Martins… - Nature …, 2019 - nature.com
Antimicrobial peptides (AMPs) are promising antimicrobials, however, the potential of
bacterial resistance is a major concern. Here we systematically study the evolution of …

Experimental design, population dynamics, and diversity in microbial experimental evolution

B Van den Bergh, T Swings, M Fauvart… - … and Molecular Biology …, 2018 - Am Soc Microbiol
In experimental evolution, laboratory-controlled conditions select for the adaptation of
species, which can be monitored in real time. Despite the current popularity of such …

Elucidating the molecular architecture of adaptation via evolve and resequence experiments

A Long, G Liti, A Luptak, O Tenaillon - Nature Reviews Genetics, 2015 - nature.com
Evolve and resequence (E&R) experiments use experimental evolution to adapt populations
to a novel environment, then next-generation sequencing to analyse genetic changes. They …

Idiosyncratic epistasis leads to global fitness–correlated trends

CW Bakerlee, AN Nguyen Ba, Y Shulgina… - Science, 2022 - science.org
Epistasis can markedly affect evolutionary trajectories. In recent decades, protein-level
fitness landscapes have revealed extensive idiosyncratic epistasis among specific …

Phenotypic heterogeneity promotes adaptive evolution

Z Bódi, Z Farkas, D Nevozhay, D Kalapis, V Lázár… - PLoS …, 2017 - journals.plos.org
Genetically identical cells frequently display substantial heterogeneity in gene expression,
cellular morphology and physiology. It has been suggested that by rapidly generating a …

When evolution is the solution to pollution: Key principles, and lessons from rapid repeated adaptation of killifish (Fundulus heteroclitus) populations

A Whitehead, BW Clark, NM Reid… - Evolutionary …, 2017 - Wiley Online Library
For most species, evolutionary adaptation is not expected to be sufficiently rapid to buffer the
effects of human‐mediated environmental changes, including environmental pollution. Here …

Gene loss predictably drives evolutionary adaptation

J Helsen, K Voordeckers… - Molecular Biology …, 2020 - academic.oup.com
Loss of gene function is common throughout evolution, even though it often leads to reduced
fitness. In this study, we systematically evaluated how an organism adapts after deleting …

[HTML][HTML] Gene essentiality is a quantitative property linked to cellular evolvability

G Liu, MYJ Yong, M Yurieva, KG Srinivasan, J Liu… - Cell, 2015 - cell.com
Gene essentiality is typically determined by assessing the viability of the corresponding
mutant cells, but this definition fails to account for the ability of cells to adaptively evolve to …