DNA Surveillance is a Web-based application that assists in the identification of the species
and population of unknown specimens by aligning user-submitted DNA sequences with a …

When a phylogenetic reconstruction does not result in one tree but in several, tree metrics
permit finding out how far the reconstructed trees are from one another. They also permit to …

The use of probabilistic models of amino acid replacement is essential for the study of
protein evolution, and programs like ProtTest implement different strategies to identify the …

Alignment quality may have as much impact on phylogenetic reconstruction as the
phylogenetic methods used. Not only the alignment algorithm, but also the method used to …

The HyPhy package is designed to provide a flexible and unified platform for carrying out
likelihood-based analyses on multiple alignments of molecular sequence data, with the …

Using an appropriate model of amino acid replacement is very important for the study of
protein evolution and phylogenetic inference. We have built a tool for the selection of the …