Fast time scale dynamics of protein backbones: NMR relaxation methods, applications, and functional consequences

VA Jarymowycz, MJ Stone - Chemical reviews, 2006 - ACS Publications
Over the past 15 years there has been an explosion of research on the dynamical properties
of proteins, largely driven by the emergence of a handful of techniques that are sensitive to …

Ubiquitin modulates liquid-liquid phase separation of UBQLN2 via disruption of multivalent interactions

TP Dao, RM Kolaitis, HJ Kim, K O'Donovan… - Molecular cell, 2018 - cell.com
Under stress, certain eukaryotic proteins and RNA assemble to form membraneless
organelles known as stress granules. The most well-studied stress granule components are …

Measurement of 15N relaxation rates in perdeuterated proteins by TROSY-based methods

NA Lakomek, J Ying, A Bax - Journal of biomolecular NMR, 2012 - Springer
While extracting dynamics parameters from backbone 15 N relaxation measurements in
proteins has become routine over the past two decades, it is increasingly recognized that …

Affinity makes the difference: nonselective interaction of the UBA domain of Ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains

D Zhang, S Raasi, D Fushman - Journal of molecular biology, 2008 - Elsevier
Ubiquilin/PLIC proteins belong to the family of UBL–UBA proteins implicated in the
regulation of the ubiquitin-dependent proteasomal degradation of cellular proteins. A human …

A small molecule agonist of EphA2 receptor tyrosine kinase inhibits tumor cell migration in vitro and prostate cancer metastasis in vivo

A Petty, E Myshkin, H Qin, H Guo, H Miao, GP Tochtrop… - 2012 - journals.plos.org
During tumor progression, EphA2 receptor can gain ligand-independent pro-oncogenic
functions due to Akt activation and reduced ephrin-A ligand engagement. The effects can be …

The structure of human CD23 and its interactions with IgE and CD21

RG Hibbert, P Teriete, GJ Grundy, RL Beavil… - The Journal of …, 2005 - rupress.org
The low-affinity immunoglobulin E (IgE) receptor, CD23 (Fc ε RII), binds both IgE and CD21
and, through these interactions, regulates the synthesis of IgE, the antibody isotype that …

Distribution of pico-and nanosecond motions in disordered proteins from nuclear spin relaxation

SN Khan, C Charlier, R Augustyniak, N Salvi… - Biophysical journal, 2015 - cell.com
Intrinsically disordered proteins and intrinsically disordered regions (IDRs) are ubiquitous in
the eukaryotic proteome. The description and understanding of their conformational …

Nanosecond time scale motions in proteins revealed by high-resolution NMR relaxometry

C Charlier, SN Khan, T Marquardsen… - Journal of the …, 2013 - ACS Publications
Understanding the molecular determinants underlying protein function requires the
characterization of both structure and dynamics at atomic resolution. Nuclear relaxation …

A critical assessment of methods to recover information from averaged data

E Ravera, L Sgheri, G Parigi, C Luchinat - … Chemistry Chemical Physics, 2016 - pubs.rsc.org
Conformational heterogeneity is key to the function of many biomacromolecules, but only a
few groups have tried to characterize it until recently. Now, thanks to the increased …

Linkage via K27 bestows ubiquitin chains with unique properties among polyubiquitins

CA Castaneda, EK Dixon, O Walker, A Chaturvedi… - Structure, 2016 - cell.com
Polyubiquitination, a critical protein post-translational modification, signals for a diverse set
of cellular events via the different isopeptide linkages formed between the C terminus of one …