Designing future crops: genomics-assisted breeding comes of age

RK Varshney, A Bohra, J Yu, A Graner, Q Zhang… - Trends in Plant …, 2021 - cell.com
Over the past decade, genomics-assisted breeding (GAB) has been instrumental in
harnessing the potential of modern genome resources and characterizing and exploiting …

Plant pan-genomes are the new reference

PE Bayer, AA Golicz, A Scheben, J Batley, D Edwards - Nature plants, 2020 - nature.com
Recent years have seen a surge in plant genome sequencing projects and the comparison
of multiple related individuals. The high degree of genomic variation observed led to the …

[HTML][HTML] A route to de novo domestication of wild allotetraploid rice

H Yu, T Lin, X Meng, H Du, J Zhang, G Liu, M Chen… - Cell, 2021 - cell.com
Cultivated rice varieties are all diploid, and polyploidization of rice has long been desired
because of its advantages in genome buffering, vigorousness, and environmental …

Pangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet

J Chen, Y Liu, M Liu, W Guo, Y Wang, Q He, W Chen… - Nature Genetics, 2023 - nature.com
Broomcorn millet (Panicum miliaceum L.) is an orphan crop with the potential to improve
cereal production and quality, and ensure food security. Here we present the genetic …

Eight high-quality genomes reveal pan-genome architecture and ecotype differentiation of Brassica napus

JM Song, Z Guan, J Hu, C Guo, Z Yang, S Wang, D Liu… - Nature plants, 2020 - nature.com
Rapeseed (Brassica napus) is the second most important oilseed crop in the world but the
genetic diversity underlying its massive phenotypic variations remains largely unexplored …

Origin and evolution of the octoploid strawberry genome

PP Edger, TJ Poorten, R VanBuren, MA Hardigan… - Nature …, 2019 - nature.com
Cultivated strawberry emerged from the hybridization of two wild octoploid species, both
descendants from the merger of four diploid progenitor species into a single nucleus more …

BRAD V3. 0: an upgraded Brassicaceae database

H Chen, T Wang, X He, X Cai, R Lin… - Nucleic Acids …, 2022 - academic.oup.com
Abstract The Brassicaceae Database (BRAD version 3.0, BRAD V3. 0; http://brassicadb. cn)
has evolved from the former Brassica Database (BRAD V2. 0), and represents an important …

The genome sequence of segmental allotetraploid peanut Arachis hypogaea

DJ Bertioli, J Jenkins, J Clevenger, O Dudchenko… - Nature …, 2019 - nature.com
Like many other crops, the cultivated peanut (Arachis hypogaea L.) is of hybrid origin and
has a polyploid genome that contains essentially complete sets of chromosomes from two …

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

ZJ Chen, A Sreedasyam, A Ando, Q Song… - Nature …, 2020 - nature.com
Polyploidy is an evolutionary innovation for many animals and all flowering plants, but its
impact on selection and domestication remains elusive. Here we analyze genome evolution …

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

J Zhang, X Zhang, H Tang, Q Zhang, X Hua, X Ma… - Nature …, 2018 - nature.com
Modern sugarcanes are polyploid interspecific hybrids, combining high sugar content from
Saccharum officinarum with hardiness, disease resistance and ratooning of Saccharum …