Alternative cleavage and polyadenylation in health and disease

AJ Gruber, M Zavolan - Nature Reviews Genetics, 2019 - nature.com
Most human genes have multiple sites at which RNA 3ʹ end cleavage and polyadenylation
can occur, enabling the expression of distinct transcript isoforms under different conditions …

Alternative cleavage and polyadenylation: extent, regulation and function

R Elkon, AP Ugalde, R Agami - Nature Reviews Genetics, 2013 - nature.com
The 3′ end of most protein-coding genes and long non-coding RNAs is cleaved and
polyadenylated. Recent discoveries have revealed that a large proportion of these genes …

Dynamic landscape and evolution of m6A methylation in human

H Zhang, X Shi, T Huang, X Zhao, W Chen… - Nucleic acids …, 2020 - academic.oup.com
Abstract m6A is a prevalent internal modification in mRNAs and has been linked to the
diverse effects on mRNA fate. To explore the landscape and evolution of human m6A, we …

U1 snRNP regulates cancer cell migration and invasion in vitro

JM Oh, CC Venters, C Di, AM Pinto, L Wan… - Nature …, 2020 - nature.com
Stimulated cells and cancer cells have widespread shortening of mRNA 3'-untranslated
regions (3'UTRs) and switches to shorter mRNA isoforms due to usage of more proximal …

A majority of m6A residues are in the last exons, allowing the potential for 3′ UTR regulation

S Ke, EA Alemu, C Mertens, EC Gantman… - Genes & …, 2015 - genesdev.cshlp.org
We adapted UV CLIP (cross-linking immunoprecipitation) to accurately locate tens of
thousands of m6A residues in mammalian mRNA with single-nucleotide resolution. More …

Mammalian NET-seq reveals genome-wide nascent transcription coupled to RNA processing

T Nojima, T Gomes, ARF Grosso, H Kimura, MJ Dye… - Cell, 2015 - cell.com
Transcription is a highly dynamic process. Consequently, we have developed native
elongating transcript sequencing technology for mammalian chromatin (mNET-seq), which …

Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3′-UTR landscape across seven tumour types

Z **a, LA Donehower, TA Cooper, JR Neilson… - Nature …, 2014 - nature.com
Alternative polyadenylation (APA) is a pervasive mechanism in the regulation of most
human genes, and its implication in diseases including cancer is only beginning to be …

Alternative mRNA transcription, processing, and translation: insights from RNA sequencing

E de Klerk, P AC't Hoen - Trends in Genetics, 2015 - cell.com
The human transcriptome comprises> 80000 protein-coding transcripts and the estimated
number of proteins synthesized from these transcripts is in the range of 250000 to 1 million …

CFIm25 links alternative polyadenylation to glioblastoma tumour suppression

CP Masamha, Z **a, J Yang, TR Albrecht, M Li… - Nature, 2014 - nature.com
The global shortening of messenger RNAs through alternative polyadenylation (APA) that
occurs during enhanced cellular proliferation represents an important, yet poorly understood …

[HTML][HTML] iCLIP: protein–RNA interactions at nucleotide resolution

I Huppertz, J Attig, A D'Ambrogio, LE Easton, CR Sibley… - Methods, 2014 - Elsevier
RNA-binding proteins (RBPs) are key players in the post-transcriptional regulation of gene
expression. Precise knowledge about their binding sites is therefore critical to unravel their …