Establishment of a morphological atlas of the Caenorhabditis elegans embryo using deep-learning-based 4D segmentation

J Cao, G Guan, VWS Ho, MK Wong, LY Chan… - Nature …, 2020 - nature.com
The invariant development and transparent body of the nematode Caenorhabditis elegans
enables complete delineation of cell lineages throughout development. Despite extensive …

[HTML][HTML] Structural inheritance of the actin cytoskeletal organization determines the body axis in regenerating hydra

A Livshits, L Shani-Zerbib, Y Maroudas-Sacks, E Braun… - Cell reports, 2017 - cell.com
Understanding how mechanics complement bio-signaling in defining patterns during
morphogenesis is an outstanding challenge. Here, we utilize the multicellular polyp Hydra to …

Cell morphology-based classification of red blood cells using holographic imaging informatics

F Yi, I Moon, B Javidi - Biomedical optics express, 2016 - opg.optica.org
We present methods that automatically select a linear or nonlinear classifier for red blood
cell (RBC) classification by analyzing the equality of the covariance matrices in Gabor …

Light sheet fluorescence microscopy (LSFM): past, present and future

J Lim, HK Lee, W Yu, S Ahmed - Analyst, 2014 - pubs.rsc.org
Light sheet fluorescence microscopy (LSFM) has emerged as an important imaging modality
to follow biology in live 3D samples over time with reduced phototoxicity and …

A novel generalized gradient vector flow snake model using minimal surface and component-normalized method for medical image segmentation

S Zhu, R Gao - Biomedical Signal Processing and Control, 2016 - Elsevier
Active contours, or snakes, have a wide range of applications in medical image
segmentation. Gradient vector flow (GVF) field, generalized GVF field and other external …

Cytoplasmic flow and mixing due to deformation of motile cells

EF Koslover, CK Chan, JA Theriot - Biophysical journal, 2017 - cell.com
The cytoplasm of a living cell is a dynamic environment through which intracellular
components must move and mix. In motile, rapidly deforming cells such as human …

Stochastic morphological swings in Hydra regeneration: A manifestation of noisy canalized morphogenesis

O Agam, E Braun - Proceedings of the National Academy of Sciences, 2025 - pnas.org
Animal morphogenesis, the development of an organism's body form, is commonly
perceived as a directed and almost deterministic process. However, noise and stochastic …

Quantitative 3D analysis of complex single border cell behaviors in coordinated collective cell migration

A Cliffe, DP Doupé, HH Sung, IKH Lim, KH Ong… - Nature …, 2017 - nature.com
Understanding the mechanisms of collective cell migration is crucial for cancer metastasis,
wound healing and many developmental processes. Imaging a migrating cluster in vivo is …

Segmentation of the clustered cells with optimized boundary detection in negative phase contrast images

Y Wang, Z Zhang, H Wang, S Bi - PloS one, 2015 - journals.plos.org
Cell image segmentation plays a central role in numerous biology studies and clinical
applications. As a result, the development of cell image segmentation algorithms with high …

Segmentation of phase contrast microscopy images based on multi-scale local basic image features histograms

N Jaccard, N Szita, LD Griffin - Computer Methods in …, 2017 - Taylor & Francis
Phase contrast microscopy (PCM) is routinely used for the inspection of adherent cell
cultures in all fields of biology and biomedicine. Key decisions for experimental protocols …