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Establishment of a morphological atlas of the Caenorhabditis elegans embryo using deep-learning-based 4D segmentation
J Cao, G Guan, VWS Ho, MK Wong, LY Chan… - Nature …, 2020 - nature.com
The invariant development and transparent body of the nematode Caenorhabditis elegans
enables complete delineation of cell lineages throughout development. Despite extensive …
enables complete delineation of cell lineages throughout development. Despite extensive …
[HTML][HTML] Structural inheritance of the actin cytoskeletal organization determines the body axis in regenerating hydra
A Livshits, L Shani-Zerbib, Y Maroudas-Sacks, E Braun… - Cell reports, 2017 - cell.com
Understanding how mechanics complement bio-signaling in defining patterns during
morphogenesis is an outstanding challenge. Here, we utilize the multicellular polyp Hydra to …
morphogenesis is an outstanding challenge. Here, we utilize the multicellular polyp Hydra to …
Cell morphology-based classification of red blood cells using holographic imaging informatics
We present methods that automatically select a linear or nonlinear classifier for red blood
cell (RBC) classification by analyzing the equality of the covariance matrices in Gabor …
cell (RBC) classification by analyzing the equality of the covariance matrices in Gabor …
Light sheet fluorescence microscopy (LSFM): past, present and future
Light sheet fluorescence microscopy (LSFM) has emerged as an important imaging modality
to follow biology in live 3D samples over time with reduced phototoxicity and …
to follow biology in live 3D samples over time with reduced phototoxicity and …
A novel generalized gradient vector flow snake model using minimal surface and component-normalized method for medical image segmentation
S Zhu, R Gao - Biomedical Signal Processing and Control, 2016 - Elsevier
Active contours, or snakes, have a wide range of applications in medical image
segmentation. Gradient vector flow (GVF) field, generalized GVF field and other external …
segmentation. Gradient vector flow (GVF) field, generalized GVF field and other external …
Cytoplasmic flow and mixing due to deformation of motile cells
The cytoplasm of a living cell is a dynamic environment through which intracellular
components must move and mix. In motile, rapidly deforming cells such as human …
components must move and mix. In motile, rapidly deforming cells such as human …
Stochastic morphological swings in Hydra regeneration: A manifestation of noisy canalized morphogenesis
O Agam, E Braun - Proceedings of the National Academy of Sciences, 2025 - pnas.org
Animal morphogenesis, the development of an organism's body form, is commonly
perceived as a directed and almost deterministic process. However, noise and stochastic …
perceived as a directed and almost deterministic process. However, noise and stochastic …
Quantitative 3D analysis of complex single border cell behaviors in coordinated collective cell migration
Understanding the mechanisms of collective cell migration is crucial for cancer metastasis,
wound healing and many developmental processes. Imaging a migrating cluster in vivo is …
wound healing and many developmental processes. Imaging a migrating cluster in vivo is …
Segmentation of the clustered cells with optimized boundary detection in negative phase contrast images
Cell image segmentation plays a central role in numerous biology studies and clinical
applications. As a result, the development of cell image segmentation algorithms with high …
applications. As a result, the development of cell image segmentation algorithms with high …
Segmentation of phase contrast microscopy images based on multi-scale local basic image features histograms
Phase contrast microscopy (PCM) is routinely used for the inspection of adherent cell
cultures in all fields of biology and biomedicine. Key decisions for experimental protocols …
cultures in all fields of biology and biomedicine. Key decisions for experimental protocols …