The roles of embryonic transcription factor BRACHYURY in tumorigenesis and progression

M Chen, Y Wu, H Zhang, S Li, J Zhou, J Shen - Frontiers in Oncology, 2020 - frontiersin.org
Transcription factor brachyury, with a DNA-binding T-domain, regulates posterior mesoderm
formation and notochord development through binding with highly conserved palindromic …

Single-cell transcriptomic studies unveil potential nodes of the notochord gene regulatory network

LJ Negrón-Piñeiro, A Di Gregorio - Integrative and Comparative …, 2024 - academic.oup.com
Transcription factors (TFs) are DNA-binding proteins able to modulate the timing, location,
and levels of gene expression by binding to regulatory DNA regions. Therefore, the …

Cis-regulatory interfaces reveal the molecular mechanisms underlying the notochord gene regulatory network of Ciona

LJ Negrón-Piñeiro, Y Wu, S Popsuj… - Nature …, 2024 - nature.com
Tissue-specific gene expression is fundamental in development and evolution, and is
mediated by transcription factors and by the cis-regulatory regions (enhancers) that they …

Zelda potentiates morphogen activity by increasing chromatin accessibility

SM Foo, Y Sun, B Lim, R Ziukaite, K O'Brien, CY Nien… - Current Biology, 2014 - cell.com
Zygotic genome activation (ZGA) is a major genome programming event whereby the cells
of the embryo begin to adopt specified fates. Experiments in Drosophila and zebrafish have …

An ancestral Wnt–Brachyury feedback loop in axial patterning and recruitment of mesoderm-determining target genes

M Schwaiger, C Andrikou, R Dnyansagar… - Nature Ecology & …, 2022 - nature.com
Transcription factors are crucial drivers of cellular differentiation during animal development
and often share ancient evolutionary origins. The T-box transcription factor Brachyury plays …

[HTML][HTML] Diverse logics and grammar encode notochord enhancers

BP Song, MF Ragsac, K Tellez, GA **dal, JL Grudzien… - Cell reports, 2023 - cell.com
The notochord is a defining feature of all chordates. The transcription factors Zic and ETS
regulate enhancer activity within the notochord. We conduct high-throughput screens of …

Evolution and classification of the T-box transcription factor family

A Sebé-Pedrós, I Ruiz-Trillo - Current topics in developmental biology, 2017 - Elsevier
T-box proteins are key developmental transcription factors in Metazoa. Until recently they
were thought to be animal specific and many T-box classes were considered bilaterian …

Regulation and evolution of muscle development in tunicates

F Razy-Krajka, A Stolfi - EvoDevo, 2019 - Springer
For more than a century, studies on tunicate muscle formation have revealed many
principles of cell fate specification, gene regulation, morphogenesis, and evolution. Here, we …

The notochord gene regulatory network in chordate evolution: conservation and divergence from Ciona to vertebrates

A Di Gregorio - Current Topics in Developmental Biology, 2020 - Elsevier
The notochord is a structure required for support and patterning of all chordate embryos,
from sea squirts to humans. An increasing amount of information on notochord development …

Functional and evolutionary insights from the Ciona notochord transcriptome

WM Reeves, Y Wu, MJ Harder, MT Veeman - Development, 2017 - journals.biologists.com
The notochord of the ascidian Ciona consists of only 40 cells, and is a longstanding model
for studying organogenesis in a small, simple embryo. Here, we perform RNAseq on flow …