Alternative splicing at the intersection of biological timing, development, and stress responses

D Staiger, JWS Brown - The Plant Cell, 2013 - academic.oup.com
High-throughput sequencing for transcript profiling in plants has revealed that alternative
splicing (AS) affects a much higher proportion of the transcriptome than was previously …

[HTML][HTML] Eukaryotic snoRNAs: a paradigm for gene expression flexibility

G Dieci, M Preti, B Montanini - Genomics, 2009 - Elsevier
Small nucleolar RNAs (snoRNAs) are one of the most ancient and numerous families of non-
protein-coding RNAs (ncRNAs). The main function of snoRNAs–to guide site-specific rRNA …

Map** the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator

W Huang, P Pérez-García, A Pokhilko, AJ Millar… - Science, 2012 - science.org
In many organisms, the circadian clock is composed of functionally coupled morning and
evening oscillators. In Arabidopsis, oscillator coupling relies on a core loop in which the …

Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis

H Wang, PJ Chung, J Liu, IC Jang, MJ Kean… - Genome …, 2014 - genome.cshlp.org
Recent research on long noncoding RNAs (lncRNAs) has expanded our understanding of
gene transcription regulation and the generation of cellular complexity. Depending on their …

PSEUDO-RESPONSE REGULATORS 9, 7, and 5 Are Transcriptional Repressors in the Arabidopsis Circadian Clock

N Nakamichi, T Kiba, R Henriques, T Mizuno… - The Plant …, 2010 - academic.oup.com
An interlocking transcriptional-translational feedback loop of clock-associated genes is
thought to be the central oscillator of the circadian clock in plants. TIMING OF CAB …

TOC1 functions as a molecular switch connecting the circadian clock with plant responses to drought

T Legnaioli, J Cuevas, P Mas - The EMBO journal, 2009 - embopress.org
Despite our increasing knowledge on the transcriptional networks connecting abscisic acid
(ABA) signalling with the circadian clock, the molecular nodes in which both pathways …

A methyl transferase links the circadian clock to the regulation of alternative splicing

SE Sanchez, E Petrillo, EJ Beckwith, X Zhang… - Nature, 2010 - nature.com
Circadian rhythms allow organisms to time biological processes to the most appropriate
phases of the day–night cycle. Post-transcriptional regulation is emerging as an important …

Circadian control of global gene expression patterns

CJ Doherty, SA Kay - Annual review of genetics, 2010 - annualreviews.org
An internal time-kee** mechanism has been observed in almost every organism studied
from archaea to humans. This circadian clock provides a competitive advantage in fitness …

REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways

R Rawat, J Schwartz, MA Jones… - Proceedings of the …, 2009 - National Acad Sciences
The circadian clock modulates expression of a large fraction of the Arabidopsis genome and
affects many aspects of plant growth and development. We have discovered one way in …

SKIP Is a Component of the Spliceosome Linking Alternative Splicing and the Circadian Clock in Arabidopsis

X Wang, F Wu, Q **e, H Wang, Y Wang, Y Yue… - The Plant …, 2012 - academic.oup.com
Circadian clocks generate endogenous rhythms in most organisms from cyanobacteria to
humans and facilitate entrainment to environmental diurnal cycles, thus conferring a fitness …