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Identification of non-coding silencer elements and their regulation of gene expression
B Pang, JH van Weerd, FL Hamoen… - … Reviews Molecular Cell …, 2023 - nature.com
Cell type-and differentiation-specific gene expression is precisely controlled by genomic non-
coding regulatory elements (NCREs), which include promoters, enhancers, silencers and …
coding regulatory elements (NCREs), which include promoters, enhancers, silencers and …
CpG islands and the regulation of transcription
Vertebrate CpG islands (CGIs) are short interspersed DNA sequences that deviate
significantly from the average genomic pattern by being GC-rich, CpG-rich, and …
significantly from the average genomic pattern by being GC-rich, CpG-rich, and …
Sequence determinants of human gene regulatory elements
DNA can determine where and when genes are expressed, but the full set of sequence
determinants that control gene expression is unknown. Here, we measured the …
determinants that control gene expression is unknown. Here, we measured the …
Intragenic DNA methylation prevents spurious transcription initiation
In mammals, DNA methylation occurs mainly at CpG dinucleotides. Methylation of the
promoter suppresses gene expression, but the functional role of gene-body DNA …
promoter suppresses gene expression, but the functional role of gene-body DNA …
The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation
S Malik, RG Roeder - Nature Reviews Genetics, 2010 - nature.com
The Mediator is an evolutionarily conserved, multiprotein complex that is a key regulator of
protein-coding genes. In metazoan cells, multiple pathways that are responsible for …
protein-coding genes. In metazoan cells, multiple pathways that are responsible for …
Control of transcriptional elongation
Elongation is becoming increasingly recognized as a critical step in eukaryotic
transcriptional regulation. Although traditional genetic and biochemical studies have …
transcriptional regulation. Although traditional genetic and biochemical studies have …
Genome-wide analysis of mammalian promoter architecture and evolution
Mammalian promoters can be separated into two classes, conserved TATA box–enriched
promoters, which initiate at a well-defined site, and more plastic, broad and evolvable CpG …
promoters, which initiate at a well-defined site, and more plastic, broad and evolvable CpG …
The RNA polymerase II core promoter
ST Smale, JT Kadonaga - Annual review of biochemistry, 2003 - annualreviews.org
▪ Abstract The events leading to transcription of eukaryotic protein-coding genes culminate
in the positioning of RNA polymerase II at the correct initiation site. The core promoter, which …
in the positioning of RNA polymerase II at the correct initiation site. The core promoter, which …
The African swine fever virus transcriptome
African swine fever virus (ASFV) causes hemorrhagic fever in domestic pigs, presenting the
biggest global threat to animal farming in recorded history. Despite the importance of ASFV …
biggest global threat to animal farming in recorded history. Despite the importance of ASFV …
Biology of tissue inhibitor of metalloproteinase 3 (TIMP3), and its therapeutic implications in cardiovascular pathology
D Fan, Z Kassiri - Frontiers in Physiology, 2020 - frontiersin.org
Tissue inhibitor of metalloproteinase 3 (TIMP3) is unique among the four TIMPs due to its
extracellular matrix (ECM)-binding property and broad range of inhibitory substrates that …
extracellular matrix (ECM)-binding property and broad range of inhibitory substrates that …