Identification of non-coding silencer elements and their regulation of gene expression

B Pang, JH van Weerd, FL Hamoen… - … Reviews Molecular Cell …, 2023 - nature.com
Cell type-and differentiation-specific gene expression is precisely controlled by genomic non-
coding regulatory elements (NCREs), which include promoters, enhancers, silencers and …

CpG islands and the regulation of transcription

AM Deaton, A Bird - Genes & development, 2011 - genesdev.cshlp.org
Vertebrate CpG islands (CGIs) are short interspersed DNA sequences that deviate
significantly from the average genomic pattern by being GC-rich, CpG-rich, and …

Sequence determinants of human gene regulatory elements

B Sahu, T Hartonen, P Pihlajamaa, B Wei, K Dave… - Nature …, 2022 - nature.com
DNA can determine where and when genes are expressed, but the full set of sequence
determinants that control gene expression is unknown. Here, we measured the …

Intragenic DNA methylation prevents spurious transcription initiation

F Neri, S Rapelli, A Krepelova, D Incarnato, C Parlato… - Nature, 2017 - nature.com
In mammals, DNA methylation occurs mainly at CpG dinucleotides. Methylation of the
promoter suppresses gene expression, but the functional role of gene-body DNA …

The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation

S Malik, RG Roeder - Nature Reviews Genetics, 2010 - nature.com
The Mediator is an evolutionarily conserved, multiprotein complex that is a key regulator of
protein-coding genes. In metazoan cells, multiple pathways that are responsible for …

Control of transcriptional elongation

H Kwak, JT Lis - Annual review of genetics, 2013 - annualreviews.org
Elongation is becoming increasingly recognized as a critical step in eukaryotic
transcriptional regulation. Although traditional genetic and biochemical studies have …

Genome-wide analysis of mammalian promoter architecture and evolution

P Carninci, A Sandelin, B Lenhard, S Katayama… - Nature …, 2006 - nature.com
Mammalian promoters can be separated into two classes, conserved TATA box–enriched
promoters, which initiate at a well-defined site, and more plastic, broad and evolvable CpG …

The RNA polymerase II core promoter

ST Smale, JT Kadonaga - Annual review of biochemistry, 2003 - annualreviews.org
▪ Abstract The events leading to transcription of eukaryotic protein-coding genes culminate
in the positioning of RNA polymerase II at the correct initiation site. The core promoter, which …

The African swine fever virus transcriptome

G Cackett, D Matelska, M Sýkora, R Portugal… - Journal of …, 2020 - journals.asm.org
African swine fever virus (ASFV) causes hemorrhagic fever in domestic pigs, presenting the
biggest global threat to animal farming in recorded history. Despite the importance of ASFV …

Biology of tissue inhibitor of metalloproteinase 3 (TIMP3), and its therapeutic implications in cardiovascular pathology

D Fan, Z Kassiri - Frontiers in Physiology, 2020 - frontiersin.org
Tissue inhibitor of metalloproteinase 3 (TIMP3) is unique among the four TIMPs due to its
extracellular matrix (ECM)-binding property and broad range of inhibitory substrates that …