Single-cell immune repertoire analysis

SE Irac, MSF Soon, N Borcherding, ZK Tuong - Nature Methods, 2024 - nature.com
Single-cell T cell and B cell antigen receptor-sequencing data analysis can potentially
perform in-depth assessments of adaptive immune cells that inform on understanding …

Adaptive immune receptor repertoire analysis

V Mhanna, H Bashour, K Lê Quý, P Barennes… - Nature Reviews …, 2024 - nature.com
B cell and T cell receptor repertoires compose the adaptive immune receptor repertoire
(AIRR) of an individual. The AIRR is a unique collection of antigen-specific receptors that …

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

JA Ruffolo, LS Chu, SP Mahajan, JJ Gray - Nature communications, 2023 - nature.com
Antibodies have the capacity to bind a diverse set of antigens, and they have become critical
therapeutics and diagnostic molecules. The binding of antibodies is facilitated by a set of six …

Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease

P Zhou, G Song, H Liu, M Yuan, W He, N Beutler, X Zhu… - Immunity, 2023 - cell.com
Pan-betacoronavirus neutralizing antibodies may hold the key to develo** broadly
protective vaccines against novel pandemic coronaviruses and to more effectively respond …

The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures

B Abanades, TH Olsen, MIJ Raybould… - Nucleic Acids …, 2024 - academic.oup.com
Antibodies are key proteins of the adaptive immune system, and there exists a large body of
academic literature and patents dedicated to their study and concomitant conversion into …

Addressing the antibody germline bias and its effect on language models for improved antibody design

TH Olsen, IH Moal, CM Deane - Bioinformatics, 2024 - academic.oup.com
Motivation The versatile binding properties of antibodies have made them an extremely
important class of biotherapeutics. However, therapeutic antibody development is a …

Improving antibody language models with native pairing

SM Burbach, B Briney - Patterns, 2024 - cell.com
Existing antibody language models are limited by their use of unpaired antibody sequence
data. A recently published dataset of∼ 1.6× 10 6 natively paired human antibody sequences …

Ai models for protein design are driving antibody engineering

MF Chungyoun, JJ Gray - Current opinion in biomedical engineering, 2023 - Elsevier
Therapeutic antibody engineering seeks to identify antibody sequences with specific binding
to a target and optimized drug-like properties. When guided by deep learning, antibody …

Innovations and trends in antibody repertoire analysis

DR Townsend, DM Towers, JJ Lavinder… - Current Opinion in …, 2024 - Elsevier
Highlights•Functional screens integrate with single cell BCR-sequencing and
transcriptomics.•Bottom-up and top-down MS enable comprehensive profiling of circulating …

Contextualising the developability risk of antibodies with lambda light chains using enhanced therapeutic antibody profiling

MIJ Raybould, OM Turnbull, A Suter, B Guloglu… - Communications …, 2024 - nature.com
Antibodies with lambda light chains (λ-antibodies) are generally considered to be less
developable than those with kappa light chains (κ-antibodies). Though this hypothesis has …