Understanding plant stress memory response for abiotic stress resilience: Molecular insights and prospects

M Sharma, P Kumar, V Verma, R Sharma… - Plant Physiology and …, 2022 - Elsevier
As sessile species and without the possibility of escape, plants constantly face numerous
environmental stresses. To adapt in the external environmental cues, plants adjust …

Chromatin-state discovery and genome annotation with ChromHMM

J Ernst, M Kellis - Nature protocols, 2017 - nature.com
Noncoding DNA regions have central roles in human biology, evolution, and disease.
ChromHMM helps to annotate the noncoding genome using epigenomic information across …

Widespread long-range cis-regulatory elements in the maize genome

WA Ricci, Z Lu, L Ji, AP Marand, CL Ethridge… - Nature plants, 2019 - nature.com
Genetic map** studies on crops suggest that agronomic traits can be controlled by gene–
distal intergenic loci. Despite the biological importance and the potential agronomic utility of …

[HTML][HTML] Plant DNA methylation: an epigenetic mark in development, environmental interactions, and evolution

F Lucibelli, MC Valoroso, S Aceto - International Journal of Molecular …, 2022 - mdpi.com
DNA methylation is an epigenetic modification of the genome involved in the regulation of
gene expression and modulation of chromatin structure. Plant genomes are widely …

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

H Stroud, T Do, J Du, X Zhong, S Feng… - Nature structural & …, 2014 - nature.com
DNA methylation occurs in CG and non-CG sequence contexts. Non-CG methylation is
abundant in plants and is mediated by CHROMOMETHYLASE (CMT) and DOMAINS …

Histone lysine methylation dynamics: establishment, regulation, and biological impact

JC Black, C Van Rechem, JR Whetstine - Molecular cell, 2012 - cell.com
Histone lysine methylation has emerged as a critical player in the regulation of gene
expression, cell cycle, genome stability, and nuclear architecture. Over the past decade, a …

[HTML][HTML] The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin

A Zemach, MY Kim, PH Hsieh, D Coleman-Derr… - Cell, 2013 - cell.com
Nucleosome remodelers of the DDM1/Lsh family are required for DNA methylation of
transposable elements, but the reason for this is unknown. How DDM1 interacts with other …

Regulation of nucleosome dynamics by histone modifications

GE Zentner, S Henikoff - Nature structural & molecular biology, 2013 - nature.com
Chromatin is a dynamic structure that must respond to myriad stimuli to regulate access to
DNA, and chemical modification of histones is a major means by which the cell modulates …

Innate immune memory: An evolutionary perspective

B Gourbal, S Pinaud, GJM Beckers… - Immunological …, 2018 - Wiley Online Library
Over the last decades, there was increasing evidence for the presence of innate immune
memory in living organisms. In this review, we compare the innate immune memory of …

[HTML][HTML] Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome

H Stroud, MVC Greenberg, S Feng, YV Bernatavichute… - Cell, 2013 - cell.com
Cytosine methylation is involved in various biological processes such as silencing of
transposable elements (TEs) and imprinting. Multiple pathways regulate DNA methylation in …