Using clusterProfiler to characterize multiomics data

S Xu, E Hu, Y Cai, Z ** of the interactions between drugs and bacteria has only started …

ExpressAnalyst: A unified platform for RNA-sequencing analysis in non-model species

P Liu, J Ewald, Z Pang, E Legrand, YS Jeon… - Nature …, 2023 - nature.com
The increasing application of RNA sequencing to study non-model species demands easy-
to-use and efficient bioinformatics tools to help researchers quickly uncover biological and …

Genome assembly and genetic dissection of a prominent drought-resistant maize germplasm

T Tian, S Wang, S Yang, Z Yang, S Liu, Y Wang… - Nature Genetics, 2023 - nature.com
In the context of climate change, drought is one of the most limiting factors that influence
crop production. Maize, as a major crop, is highly vulnerable to water deficit, which causes …

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton

Y Hu, J Chen, L Fang, Z Zhang, W Ma, Y Niu, L Ju… - Nature …, 2019 - nature.com
Allotetraploid cotton is an economically important natural-fiber-producing crop worldwide.
After polyploidization, Gossypium hirsutum L. evolved to produce a higher fiber yield and to …

Large-scale whole-genome resequencing unravels the domestication history of Cannabis sativa

G Ren, X Zhang, Y Li, K Ridout… - Science …, 2021 - science.org
Cannabis sativa has long been an important source of fiber extracted from hemp and both
medicinal and recreational drugs based on cannabinoid compounds. Here, we investigated …

Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication

X Sun, C Jiao, H Schwaninger, CT Chao, Y Ma… - Nature …, 2020 - nature.com
Domestication of the apple was mainly driven by interspecific hybridization. In the present
study, we report the haplotype-resolved genomes of the cultivated apple (Malus domestica …