[HTML][HTML] Spatially resolved transcriptomics: a comprehensive review of their technological advances, applications, and challenges

M Cheng, Y Jiang, J Xu, AFA Mentis, S Wang… - Journal of Genetics and …, 2023 - Elsevier
The ability to explore life kingdoms is largely driven by innovations and breakthroughs in
technology, from the invention of the microscope 350 years ago to the recent emergence of …

Spatial transcriptomics of the respiratory system

S Megas, A Wilbrey-Clark, A Maartens… - Annual Review of …, 2024 - annualreviews.org
Over the last decade, single-cell genomics has revealed remarkable heterogeneity and
plasticity of cell types in the lungs and airways. The challenge now is to understand how …

[HTML][HTML] Organoid modeling of human fetal lung alveolar development reveals mechanisms of cell fate patterning and neonatal respiratory disease

K Lim, APA Donovan, W Tang, D Sun, P He, JP Pett… - Cell Stem Cell, 2023 - cell.com
Variation in lung alveolar development is strongly linked to disease susceptibility. However,
underlying cellular and molecular mechanisms are difficult to study in humans. We have …

[HTML][HTML] Automatic cell-type harmonization and integration across Human Cell Atlas datasets

C Xu, M Prete, S Webb, L Jardine, BJ Stewart, R Hoo… - Cell, 2023 - cell.com
Harmonizing cell types across the single-cell community and assembling them into a
common framework is central to building a standardized Human Cell Atlas. Here, we present …

Considerations for building and using integrated single-cell atlases

K Hrovatin, L Sikkema, VA Shitov, G Heimberg… - Nature …, 2024 - nature.com
The rapid adoption of single-cell technologies has created an opportunity to build single-cell
'atlases' integrating diverse datasets across many laboratories. Such atlases can serve as a …

[HTML][HTML] A human embryonic limb cell atlas resolved in space and time

B Zhang, P He, JEG Lawrence, S Wang, E Tuck… - Nature, 2023 - nature.com
Human limbs emerge during the fourth post-conception week as mesenchymal buds, which
develop into fully formed limbs over the subsequent months. This process is orchestrated by …

SOX9 maintains human foetal lung tip progenitor state by enhancing WNT and RTK signalling

D Sun, O Llora Batlle, J van den Ameele… - The EMBO …, 2022 - embopress.org
The balance between self‐renewal and differentiation in human foetal lung epithelial
progenitors controls the size and function of the adult organ. Moreover, progenitor cell gene …

Single-cell RNA sequencing reveals the developmental program underlying proximal–distal patterning of the human lung at the embryonic stage

S Cao, H Feng, H Yi, M Pan, L Lin, YS Zhang, Z Feng… - Cell Research, 2023 - nature.com
The lung is the primary respiratory organ in human, in which the proximal airway and the
distal alveoli are responsible for air conduction and gas exchange, respectively. However …

Early human lung immune cell development and its role in epithelial cell fate

JL Barnes, M Yoshida, P He, KB Worlock… - Science …, 2023 - science.org
Studies of human lung development have focused on epithelial and mesenchymal cell types
and function, but much less is known about the develo** lung immune cells, even though …