Big data and artificial intelligence modeling for drug discovery

H Zhu - Annual review of pharmacology and toxicology, 2020 - annualreviews.org
Due to the massive data sets available for drug candidates, modern drug discovery has
advanced to the big data era. Central to this shift is the development of artificial intelligence …

Advancing computer-aided drug discovery (CADD) by big data and data-driven machine learning modeling

L Zhao, HL Ciallella, LM Aleksunes, H Zhu - Drug discovery today, 2020 - Elsevier
Highlights•Drug discovery has been advanced to a big data era with a large amount of
public data sources available.•Ten V features (volume, velocity, variety, veracity, validity …

Exposing the limitations of molecular machine learning with activity cliffs

D Van Tilborg, A Alenicheva… - Journal of chemical …, 2022 - ACS Publications
Machine learning has become a crucial tool in drug discovery and chemistry at large, eg, to
predict molecular properties, such as bioactivity, with high accuracy. However, activity …

Principles of QSAR modeling: comments and suggestions from personal experience

P Gramatica - International Journal of Quantitative Structure-Property …, 2020 - igi-global.com
At the end of her academic career, the author summarizes the main aspects of QSAR
modeling, giving comments and suggestions according to her 23 years' experience in QSAR …

Algebraic graph-assisted bidirectional transformers for molecular property prediction

D Chen, K Gao, DD Nguyen, X Chen, Y Jiang… - Nature …, 2021 - nature.com
The ability of molecular property prediction is of great significance to drug discovery, human
health, and environmental protection. Despite considerable efforts, quantitative prediction of …

QSAR modeling: where have you been? Where are you going to?

A Cherkasov, EN Muratov, D Fourches… - Journal of medicinal …, 2014 - ACS Publications
Quantitative structure–activity relationship modeling is one of the major computational tools
employed in medicinal chemistry. However, throughout its entire history it has drawn both …

Learning molecular representations for medicinal chemistry: miniperspective

KV Chuang, LM Gunsalus… - Journal of Medicinal …, 2020 - ACS Publications
The accurate modeling and prediction of small molecule properties and bioactivities depend
on the critical choice of molecular representation. Decades of informatics-driven research …

QSARINS: A new software for the development, analysis, and validation of QSAR MLR models

P Gramatica, N Chirico, E Papa, S Cassani, S Kovarich - 2013 - Wiley Online Library
QSARINS (QSAR‐INSUBRIA) is a new software for the development and validation of
multiple linear regression Quantitative Structure‐Activity Relationship (QSAR) models by …

Best practices for QSAR model development, validation, and exploitation

A Tropsha - Molecular informatics, 2010 - Wiley Online Library
After nearly five decades “in the making”, QSAR modeling has established itself as one of
the major computational molecular modeling methodologies. As any mature research …

Trust, but verify: on the importance of chemical structure curation in cheminformatics and QSAR modeling research

D Fourches, E Muratov… - Journal of chemical …, 2010 - pmc.ncbi.nlm.nih.gov
Molecular modelers and cheminformaticians typically analyze experimental data generated
by other scientists. Consequently, when it comes to data accuracy, cheminformaticians are …