Ménage à trois in the human gut: interactions between host, bacteria and phages

MK Mirzaei, CF Maurice - Nature Reviews Microbiology, 2017 - nature.com
The human gut is host to one of the densest microbial communities known, the gut
microbiota, which contains bacteria, archaea, viruses, fungi and other microbial eukaryotes …

The landscape of lysogeny across microbial community density, diversity and energetics

CB Silveira, A Luque, F Rohwer - Environmental microbiology, 2021 - Wiley Online Library
Lysogens are common at high bacterial densities, an observation that contrasts with the
prevailing view of lysogeny as a low‐density refugium strategy. Here, we review the …

Lytic to temperate switching of viral communities

B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu… - Nature, 2016 - nature.com
Microbial viruses can control host abundances via density-dependent lytic predator–prey
dynamics. Less clear is how temperate viruses, which coexist and replicate with their host …

[HTML][HTML] Xenobiotics shape the physiology and gene expression of the active human gut microbiome

CF Maurice, HJ Haiser, PJ Turnbaugh - Cell, 2013 - cell.com
The human gut contains trillions of microorganisms that influence our health by metabolizing
xenobiotics, including host-targeted drugs and antibiotics. Recent efforts have characterized …

Environmental bacteriophages: viruses of microbes in aquatic ecosystems

T Sime-Ngando - Frontiers in microbiology, 2014 - frontiersin.org
Since the discovery 2–3 decades ago that viruses of microbes are abundant in marine
ecosystems, viral ecology has grown increasingly to reach the status of a full scientific …

New paradigms in tropical limnology: the importance of the microbial food web

H Sarmento - Hydrobiologia, 2012 - Springer
Limnology has traditionally been a science of temperate regions. Long-term studies are not
common in tropical regions despite the number of large tropical lakes that constitute a …

[HTML][HTML] Tide driven microbial dynamics through virus-host interactions in the estuarine ecosystem

X Chen, W Wei, J Wang, H Li, J Sun, R Ma, N Jiao… - Water Research, 2019 - Elsevier
Microbes drive ecosystems and their viruses manipulate these processes, yet the
importance of tidal functioning on the estuarine viruses and microbes remains poorly …

Counts and sequences, observations that continue to change our understanding of viruses in nature

KE Wommack, DJ Nasko, J Chopyk… - Journal of Microbiology, 2015 - Springer
The discovery of abundant viruses in the oceans and on land has ushered in a quarter
century of groundbreaking advancements in our understanding of viruses within …

Oxygen minimum zones harbour novel viral communities with low diversity

N Cassman, A Prieto‐Davó, K Walsh… - Environmental …, 2012 - Wiley Online Library
Oxygen minimum zones (OMZs) are oceanographic features that affect ocean productivity
and biodiversity, and contribute to ocean nitrogen loss and greenhouse gas emissions. Here …

Variability and host density independence in inductions-based estimates of environmental lysogeny

B Knowles, B Bailey, L Boling, M Breitbart… - Nature …, 2017 - nature.com
Temperate bacterial viruses (phages) may enter a symbiosis with their host cell, forming a
unit called a lysogen. Infection and viral replication are disassociated in lysogens until an …