Fungi in aquatic ecosystems

HP Grossart, S Van den Wyngaert, M Kagami… - Nature Reviews …, 2019 - nature.com
Fungi are phylogenetically and functionally diverse ubiquitous components of almost all
ecosystems on Earth, including aquatic environments stretching from high montane lakes …

Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology

CJ Smith, AM Osborn - FEMS microbiology ecology, 2009 - academic.oup.com
Abstract Quantitative PCR (Q-PCR or real-time PCR) approaches are now widely applied in
microbial ecology to quantify the abundance and expression of taxonomic and functional …

Soil characteristics more strongly influence soil bacterial communities than land-use type

EE Kuramae, E Yergeau, LC Wong… - FEMS microbiology …, 2012 - academic.oup.com
To gain insight into the factors driving the structure of bacterial communities in soil, we
applied real-time PCR, PCR-denaturing gradient gel electrophoreses, and phylogenetic …

Stable isotope probing—linking microbial identity to function

MG Dumont, JC Murrell - Nature Reviews Microbiology, 2005 - nature.com
Stable isotope probing (SIP) is a technique that is used to identify the microorganisms in
environmental samples that use a particular growth substrate. The method relies on the …

The fat that matters: soil food web analysis using fatty acids and their carbon stable isotope signature

L Ruess, PM Chamberlain - Soil Biology and Biochemistry, 2010 - Elsevier
Chemical taxonomy based upon the composition of lipids is widely applied to investigate
microbial communities and fatty acids have recently been employed to connect soil …

Diversity and ecology of soil fungal communities: increased understanding through the application of molecular techniques

IC Anderson, JWG Cairney - Environmental microbiology, 2004 - Wiley Online Library
Fungi fulfil a range of important ecological functions, yet current understanding of fungal
biodiversity in soil is limited. Direct DNA extraction from soil, coupled with polymerase chain …

Long-term effect of biochar application on yield-scaled greenhouse gas emissions in a rice paddy crop** system: A four-year case study in south China

X Qin, H Wang, C Liu, J Li, Y Wan, Q Gao, F Fan… - Science of the Total …, 2016 - Elsevier
To evaluate long-term effect of biochar application on yield-scaled greenhouse gas
emissions (YSGE) in a paddy rice crop** system, a 4-year field experiment by static …

[ΒΙΒΛΙΟ][B] Modern soil microbiology

JD Van Elsas, JT Trevors, JK Jansson, P Nannipieri - 2006 - taylorfrancis.com
In the ten years since the publication of Modern Soil Microbiology, the study of soil
microbiology has significantly changed, both in the understanding of the diversity and …

Validation and application of a PCR primer set to quantify fungal communities in the soil environment by real-time quantitative PCR

N Chemidlin Prévost-Bouré, R Christen, S Dequiedt… - PloS one, 2011 - journals.plos.org
Fungi constitute an important group in soil biological diversity and functioning. However,
characterization and knowledge of fungal communities is hampered because few primer …