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Mechanisms of protein evolution
How do proteins evolve? How do changes in sequence mediate changes in protein
structure, and in turn in function? This question has multiple angles, ranging from …
structure, and in turn in function? This question has multiple angles, ranging from …
Metabolite–enzyme coevolution: from single enzymes to metabolic pathways and networks
How individual enzymes evolved is relatively well understood. However, individual enzymes
rarely confer a physiological advantage on their own. Judging by its current state, the …
rarely confer a physiological advantage on their own. Judging by its current state, the …
A bird's-eye view of enzyme evolution: chemical, physicochemical, and physiological considerations
Enzymes catalyze a vast range of reactions. Their catalytic performances, mechanisms,
global folds, and active-site architectures are also highly diverse, suggesting that enzymes …
global folds, and active-site architectures are also highly diverse, suggesting that enzymes …
[HTML][HTML] Enzyme evolution: innovation is easy, optimization is complicated
Highlights•Enzyme 'promiscuity space'is vast.•Functional innovation by divergent evolution
is easy.•Gene loss is also an important driver of enzyme evolution.•Evolutionary trajectories …
is easy.•Gene loss is also an important driver of enzyme evolution.•Evolutionary trajectories …
Biotechnological and protein-engineering implications of ancestral protein resurrection
Highlights•Ancestral environments likely differed from the environments hosting modern
proteins.•Resurrected ancestral protein often display unusual properties and …
proteins.•Resurrected ancestral protein often display unusual properties and …
Quantifying and understanding the fitness effects of protein mutations: Laboratory versus nature
The last decade has seen a growing number of experiments aimed at systematically
map** the effects of mutations in different proteins, and of attempting to correlate their …
map** the effects of mutations in different proteins, and of attempting to correlate their …
Crystal structure of 4, 6-α-glucanotransferase supports diet-driven evolution of GH70 enzymes from α-amylases in oral bacteria
Food processing and refining has dramatically changed the human diet, but little is known
about whether this affected the evolution of enzymes in human microbiota. We present …
about whether this affected the evolution of enzymes in human microbiota. We present …
[HTML][HTML] Upper ocean oxygenation, evolution of RuBisCO and the Phanerozoic succession of phytoplankton
REM Rickaby, MRE Hubbard - Free Radical Biology and Medicine, 2019 - Elsevier
Evidence is compiled to demonstrate a redox scale within Earth's photosynthesisers that
correlates the specificity of their RuBisCO with organismal metabolic tolerance to anoxia …
correlates the specificity of their RuBisCO with organismal metabolic tolerance to anoxia …
Harnessing underground metabolism for pathway development
J Rosenberg, FM Commichau - Trends in biotechnology, 2019 - cell.com
Fermentative production of valuable substances is an economically competitive and
ecologically sustainable alternative to chemical synthesis, but it is often hampered by …
ecologically sustainable alternative to chemical synthesis, but it is often hampered by …
Frustration can limit the adaptation of promiscuous enzymes through gene duplication and specialisation
Virtually all enzymes catalyse more than one reaction, a phenomenon known as enzyme
promiscuity. It is unclear whether promiscuous enzymes are more often generalists that …
promiscuity. It is unclear whether promiscuous enzymes are more often generalists that …