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The power and pitfalls of AlphaFold2 for structure prediction beyond rigid globular proteins
Artificial intelligence-driven advances in protein structure prediction in recent years have
raised the question: has the protein structure-prediction problem been solved? Here, with a …
raised the question: has the protein structure-prediction problem been solved? Here, with a …
Tutorial: a guide for the selection of fast and accurate computational tools for the prediction of intrinsic disorder in proteins
Intrinsic disorder is instrumental for a wide range of protein functions, and its analysis, using
computational predictions from primary structures, complements secondary and tertiary …
computational predictions from primary structures, complements secondary and tertiary …
Conformational ensembles of the human intrinsically disordered proteome
Intrinsically disordered proteins and regions (collectively, IDRs) are pervasive across
proteomes in all kingdoms of life, help to shape biological functions and are involved in …
proteomes in all kingdoms of life, help to shape biological functions and are involved in …
MobiDB: 10 years of intrinsically disordered proteins
The MobiDB database (URL: https://mobidb. org/) is a knowledge base of intrinsically
disordered proteins. MobiDB aggregates disorder annotations derived from the literature …
disordered proteins. MobiDB aggregates disorder annotations derived from the literature …
Systematic identification of conditionally folded intrinsically disordered regions by AlphaFold2
The AlphaFold Protein Structure Database contains predicted structures for millions of
proteins. For the majority of human proteins that contain intrinsically disordered regions …
proteins. For the majority of human proteins that contain intrinsically disordered regions …
The HIV capsid mimics karyopherin engagement of FG-nucleoporins
CF Dickson, S Hertel, AJ Tuckwell, N Li, J Ruan… - Nature, 2024 - nature.com
HIV can infect non-dividing cells because the viral capsid can overcome the selective barrier
of the nuclear pore complex and deliver the genome directly into the nucleus,. Remarkably …
of the nuclear pore complex and deliver the genome directly into the nucleus,. Remarkably …
PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins
Abstract The Protein Ensemble Database (PED)(URL: https://proteinensemble. org) is the
primary resource for depositing structural ensembles of intrinsically disordered proteins. This …
primary resource for depositing structural ensembles of intrinsically disordered proteins. This …
[HTML][HTML] AlphaFold2: a role for disordered protein/region prediction?
The development of AlphaFold2 marked a paradigm-shift in the structural biology
community. Herein, we assess the ability of AlphaFold2 to predict disordered regions …
community. Herein, we assess the ability of AlphaFold2 to predict disordered regions …
Critical assessment of protein intrinsic disorder prediction (CAID)‐Results of round 2
AD Conte, M Mehdiabadi, A Bouhraoua… - Proteins: Structure …, 2023 - Wiley Online Library
Protein intrinsic disorder (ID) is a complex and context‐dependent phenomenon that covers
a continuum between fully disordered states and folded states with long dynamic regions …
a continuum between fully disordered states and folded states with long dynamic regions …
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins
A Del Conte, A Bouhraoua, M Mehdiabadi… - Nucleic acids …, 2023 - academic.oup.com
Intrinsic disorder (ID) in proteins is well-established in structural biology, with increasing
evidence for its involvement in essential biological processes. As measuring dynamic ID …
evidence for its involvement in essential biological processes. As measuring dynamic ID …