Molecular Tailoring Approach for the Direct Estimation of Individual Noncovalent Interaction Energies in Molecular Systems

MB Ahirwar, SR Gadre… - The Journal of Physical …, 2024 - ACS Publications
The noncovalent interactions (NCIs) are omnipresent in chemistry, physics, and biology. The
study of such interactions offers insights into various physicochemical phenomena. Some …

[HTML][HTML] Molecular tailoring approach for the estimation of intramolecular hydrogen bond energy

MM Deshmukh, SR Gadre - Molecules, 2021 - mdpi.com
Hydrogen bonds (HBs) play a crucial role in many physicochemical and biological
processes. Theoretical methods can reliably estimate the intermolecular HB energies …

[HTML][HTML] Fantasy versus reality in fragment-based quantum chemistry

JM Herbert - The Journal of chemical physics, 2019 - pubs.aip.org
Since the introduction of the fragment molecular orbital method 20 years ago, fragment-
based approaches have occupied a small but growing niche in quantum chemistry. These …

Fragment-based calculations of enzymatic thermochemistry require dielectric boundary conditions

PE Bowling, DR Broderick… - The Journal of Physical …, 2023 - ACS Publications
Electronic structure calculations on enzymes require hundreds of atoms to obtain converged
results, but fragment-based approximations offer a cost-effective solution. We present …

MTASpec software for calculating the vibrational IR and Raman spectra of large molecules at ab initio level

SS Khire, N Sahu, SR Gadre - Computer Physics Communications, 2022 - Elsevier
Fragmentation-based (FB) methods have been developed for enabling ab initio calculations
on large molecules and clusters. However, a well-benchmarked FB-based utility, for …

Libraries of extremely localized molecular orbitals. 3. Construction and preliminary assessment of the new databanks

B Meyer, A Genoni - The Journal of Physical Chemistry A, 2018 - ACS Publications
The fast and reliable determination of wave functions and electron densities of
macromolecules has been one of the goals of theoretical chemistry for a long time, and in …

Pair interaction energy decomposition analysis for density functional theory and density-functional tight-binding with an evaluation of energy fluctuations in molecular …

DG Fedorov, K Kitaura - The Journal of Physical Chemistry A, 2018 - ACS Publications
Pair interaction energy decomposition analysis in the fragment molecular orbital (FMO)
method is extended to treat density functional theory (DFT) and density-functional tight …

Hydrogen bond energy estimation (H‐BEE) in large molecular clusters: A Python program for quantum chemical investigations

MB Ahirwar, SS Khire, SR Gadre… - Journal of …, 2024 - Wiley Online Library
A procedure, derived from the fragmentation‐based molecular tailoring approach (MTA), has
been proposed and extensively applied by Deshmukh and Gadre for directly estimating the …

Solvent screening in zwitterions analyzed with the fragment molecular orbital method

DG Fedorov - Journal of Chemical Theory and Computation, 2019 - ACS Publications
Based on induced solvent charges, a new model of solvent screening is developed in the
framework of the fragment molecular orbital combined with the polarizable continuum …

Anharmonic theoretical vibrational spectroscopy of polypeptides

PT Panek, CR Jacob - The journal of physical chemistry letters, 2016 - ACS Publications
Because of the size of polypeptides and proteins, the quantum-chemical prediction of their
vibrational spectra presents an exceptionally challenging task. Here, we address one of …