Application of targeted mass spectrometry in bottom-up proteomics for systems biology research

NP Manes, A Nita-Lazar - Journal of proteomics, 2018 - Elsevier
The enormous diversity of proteoforms produces tremendous complexity within cellular
proteomes, facilitates intricate networks of molecular interactions, and constitutes a …

Improving phosphoproteomics profiling using data-independent mass spectrometry

A Srinivasan, JC Sing, AC Gingras… - Journal of Proteome …, 2022 - ACS Publications
Mass spectrometry-based profiling of the phosphoproteome is a powerful method of
identifying phosphorylation events at a systems level. Most phosphoproteomics studies have …

miR-181c Regulates the Mitochondrial Genome, Bioenergetics, and Propensity for Heart Failure In Vivo

S Das, D Bedja, N Campbell, B Dunkerly, V Chenna… - PloS one, 2014 - journals.plos.org
MicroRNAs (miRNAs) are small non-coding RNAs, which inhibit the stability and/or
translation of a mRNA. miRNAs have been found to play a powerful role in various …

Divergent effects of miR‐181 family members on myocardial function through protective cytosolic and detrimental mitochondrial microRNA targets

S Das, M Kohr, B Dunkerly‐Eyring, DI Lee… - Journal of the …, 2017 - Am Heart Assoc
Background Micro RNA (miRNA) is a type of noncoding RNA that can repress the
expression of target genes through posttranscriptional regulation. In addition to numerous …

Mitochondrial remodeling: rearranging, recycling, and reprogramming

RA Gottlieb, D Bernstein - Cell Calcium, 2016 - Elsevier
Mitochondria are highly dynamic and responsive organelles that respond to environmental
cues with fission and fusion. They undergo mitophagy and biogenesis, and are subject to …

Proteomics of the Heart

OA Karpov, A Stotland, K Raedschelders… - Physiological …, 2024 - journals.physiology.org
Mass spectrometry-based proteomics is a sophisticated identification tool specializing in
portraying protein dynamics at a molecular level. Proteomics provides biologists with a …

Targeted phosphoproteomics of insulin signaling using data-independent acquisition mass spectrometry

BL Parker, G Yang, SJ Humphrey, R Chaudhuri… - Science …, 2015 - science.org
A major goal in signaling biology is the establishment of high-throughput quantitative
methods for measuring changes in protein phosphorylation of entire signal transduction …

Map** signalling perturbations in myocardial fibrosis via the integrative phosphoproteomic profiling of tissue from diverse sources

U Kuzmanov, EY Wang, R Vanderlaan… - Nature biomedical …, 2020 - nature.com
Study of the molecular basis of myocardial fibrosis is hampered by limited access to tissues
from human patients and by confounding variables associated with sample accessibility …

Regulation of cardiac proteasomes by ubiquitination, SUMOylation, and beyond

Z Cui, SB Scruggs, JE Gilda, P **… - Journal of molecular and …, 2014 - Elsevier
The ubiquitin–proteasome system (UPS) is the major intracellular degradation system, and
its proper function is critical to the health and function of cardiac cells. Alterations in cardiac …

Proteomics of human mitochondria

J Palmfeldt, P Bross - Mitochondrion, 2017 - Elsevier
Proteomics have passed through a tremendous development in the recent years by the
development of ever more sensitive, fast and precise mass spectrometry methods. The …