A type system for a stochastic CLS

M Dezani-Ciancaglini, P Giannini, A Troina - ar** Sequences is suitable to describe the evolution of
microbiological systems, taking into account the speed of the described activities. We …

Modelling ammonium transporters in arbuscular mycorrhiza symbiosis

M Coppo, F Damiani, M Drocco, E Grassi… - … Systems Biology XIII, 2011 - Springer
Abstract The Stochastic Calculus of Wrapped Compartments (SCWC) is a recently proposed
variant of the Stochastic Calculus of Loo** Sequences (SCLS), a language for the …

A type system for required/excluded elements in CLS

M Dezani-Ciancaglini, P Giannini, A Troina - ar** sequences is a formalism for describing the evolution of biological
systems by means of term rewriting rules. We enrich this calculus with a type discipline to …

Simulation techniques for the calculus of wrapped compartments

M Coppo, F Damiani, M Drocco, E Grassi… - Theoretical Computer …, 2012 - Elsevier
The modelling and analysis of biological systems has deep roots in Mathematics,
specifically in the field of Ordinary Differential Equations (ODEs). Alternative approaches …

Typed stochastic semantics for the calculus of loo** sequences

L Bioglio, M Dezani-Ciancaglini, P Giannini… - Theoretical Computer …, 2012 - Elsevier
The stochastic calculus of loo** sequences is a quantitative term rewrite formalism
suitable to describe the evolution of microbiological systems, taking into account the speed …

Modelling Biological and Ecological Systems with the Calculus of Wrapped Compartments

M Aldinucci, L Bioglio, C Calcagno, M Coppo… - ar** Sequences is a formalism for describing evolution of biological
systems by means of term rewriting rules. We propose to enrich this calculus by labelling …

Enumerated type semantics for the calculus of loo** sequences

L Bioglio - RAIRO-Theoretical Informatics and Applications, 2011 - cambridge.org
The calculus of loo** sequences is a formalism for describing the evolution of biological
systems by means of term rewriting rules. In this paper we enrich this calculus with a type …

Process Algebras in Systems Biology

P Milazzo - Systems Biology Modelling and Analysis: Formal …, 2022 - Wiley Online Library
We describe the development of Process Algebras and related analysis methods in the
context of systems biology. We present concepts that are at the basis of the application of …

Behavioural Types Inspired by Cellular Thresholds

B Aman, G Ciobanu - Software Engineering and Formal Methods: SEFM …, 2014 - Springer
The sodium-potassium exchange pump is a transmembrane transport protein that
establishes and maintains the appropriate internal concentrations of sodium and potassium …