Plant virus metagenomics: advances in virus discovery

MJ Roossinck, DP Martin, P Roumagnac - Phytopathology, 2015 - Am Phytopath Society
In recent years plant viruses have been detected from many environments, including
domestic and wild plants and interfaces between these systems—aquatic sources, feces of …

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

RI Amann, W Ludwig, KH Schleifer - Microbiological reviews, 1995 - Am Soc Microbiol
The frequent discrepancy between direct microscopic counts and numbers of culturable
bacteria from environmental samples is just one of several indications that we currently …

Environmental DNA: What's behind the term? Clarifying the terminology and recommendations for its future use in biomonitoring

J Pawlowski, L Apothéloz‐Perret‐Gentil… - Molecular …, 2020 - Wiley Online Library
The last decade brought a spectacular development of so‐called environmental (e) DNA
studies. In general,“environmental DNA” is defined as DNA isolated from environmental …

QMEC: a tool for high-throughput quantitative assessment of microbial functional potential in C, N, P, and S biogeochemical cycling

B Zheng, Y Zhu, J Sardans, J Peñuelas, J Su - Science China Life …, 2018 - Springer
Microorganisms are major drivers of elemental cycling in the biosphere. Determining the
abundance of microbial functional traits involved in the transformation of nutrients, including …

The NIH human microbiome project

J Peterson, S Garges, M Giovanni, P McInnes… - Genome …, 2009 - genome.cshlp.org
The Human Microbiome Project (HMP), funded as an initiative of the NIH Roadmap for
Biomedical Research (http://nihroadmap. nih. gov), is a multi-component community …

Metagenomic analyses: past and future trends

C Simon, R Daniel - Applied and environmental microbiology, 2011 - Am Soc Microbiol
Metagenomics has revolutionized microbiology by paving the way for a cultivation-
independent assessment and exploitation of microbial communities present in complex …

Metagenomics and future perspectives in virus discovery

JL Mokili, F Rohwer, BE Dutilh - Current opinion in virology, 2012 - Elsevier
Monitoring the emergence and re-emergence of viral diseases with the goal of containing
the spread of viral agents requires both adequate preparedness and quick response …

Archaea in coastal marine environments.

EF DeLong - Proceedings of the National Academy of …, 1992 - National Acad Sciences
Archaea (archaebacteria) are a phenotypically diverse group of microorganisms that share a
common evolutionary history. There are four general phenotypic groups of archaea: the …

Metagenomics: application of genomics to uncultured microorganisms

J Handelsman - Microbiology and molecular biology reviews, 2004 - Am Soc Microbiol
Metagenomics (also referred to as environmental and community genomics) is the genomic
analysis of microorganisms by direct extraction and cloning of DNA from an assemblage of …

Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity

P Hugenholtz, BM Goebel, NR Pace - Journal of bacteriology, 1998 - Am Soc Microbiol
Our perspective on microbial diversity has improved enormously over the past few decades.
In large part this has been due to molecular phylogenetic studies that objectively relate …