First-passage-time distribution in a moving parabolic potential with spatial roughness
In this paper, we investigate the first-passage-time distribution (FPTD) within a time-
dependent parabolic potential in the presence of roughness with two methods: the Kramers …
dependent parabolic potential in the presence of roughness with two methods: the Kramers …
Fluctuating landscapes and heavy tails in animal behavior
Animal behavior is shaped by a myriad of mechanisms acting on a wide range of scales,
which hampers quantitative reasoning and the identification of general principles. Here, we …
which hampers quantitative reasoning and the identification of general principles. Here, we …
Twitching motility of bacteria with type-IV pili: Fractal walks, first passage time, and their consequences on microcolonies
A human pathogen, Neisseria gonorrhoeae (NG), moves on surfaces by attaching and
retracting polymeric structures called Type IV pili. The tug-of-war between the pili results in a …
retracting polymeric structures called Type IV pili. The tug-of-war between the pili results in a …
Run-and-tumble chemotaxis using reinforcement learning
Bacterial cells use run-and-tumble motion to climb up attractant concentration gradient in
their environment. By extending the uphill runs and shortening the downhill runs the cells …
their environment. By extending the uphill runs and shortening the downhill runs the cells …
Optimal methylation noise for best chemotactic performance of E. coli
In response to a concentration gradient of chemoattractant, E. coli bacterium modulates the
rotational bias of flagellar motors which control its run-and-tumble motion, to migrate towards …
rotational bias of flagellar motors which control its run-and-tumble motion, to migrate towards …
Effect of receptor clustering on chemotactic performance of E. coli: Sensing versus adaptation
SD Mandal, S Chatterjee - Physical Review E, 2021 - APS
We show how the competition between sensing and adaptation can result in a performance
peak in Escherichia coli chemotaxis using extensive numerical simulations in a detailed …
peak in Escherichia coli chemotaxis using extensive numerical simulations in a detailed …
Effect of receptor cooperativity on methylation dynamics in bacterial chemotaxis with weak and strong gradient
SD Mandal, S Chatterjee - Physical Review E, 2022 - APS
We study methylation dynamics of the chemoreceptors as an Escherichia coli cell moves
around in a spatially varying chemoattractant environment. We consider attractant …
around in a spatially varying chemoattractant environment. We consider attractant …
Run-and-tumble motion with steplike responses to a stochastic input
We study a simple run-and-tumble random walk whose switching frequencies between run
mode and tumble mode depend on a stochastic signal. We consider a particularly sharp …
mode and tumble mode depend on a stochastic signal. We consider a particularly sharp …
Emergent complexity in slowly driven stochastic processes.
AC Costa, M Vergassola - Biorxiv: the Preprint Server for Biology, 2023 - europepmc.org
We consider the distribution of first passage time events in the presence of non-ergodic
modes that drive otherwise ergodic dynamics on a potential landscape. We find that in the …
modes that drive otherwise ergodic dynamics on a potential landscape. We find that in the …
Short time extremal response to step stimulus for a single cell E. coli
S Chatterjee - Journal of Statistical Mechanics: Theory and …, 2022 - iopscience.iop.org
After application of a step stimulus, in the form of a sudden change in attractant environment,
the receptor activity and tumbling bias of an E. coli cell change sharply to reach their …
the receptor activity and tumbling bias of an E. coli cell change sharply to reach their …