[HTML][HTML] DNA methylation in human diseases

Z **, Y Liu - Genes & diseases, 2018 - Elsevier
Even though the importance of epigenetics was first recognized in light of its role in tissue
development, an increasing amount of evidence has shown that it also plays an important …

Fourteen years of cellular deconvolution: methodology, applications, technical evaluation and outstanding challenges

H Nguyen, H Nguyen, D Tran, S Draghici… - Nucleic Acids …, 2024 - academic.oup.com
Single-cell RNA sequencing (scRNA-Seq) is a recent technology that allows for the
measurement of the expression of all genes in each individual cell contained in a sample …

Integrating spatial gene expression and breast tumour morphology via deep learning

B He, L Bergenstråhle, L Stenbeck, A Abid… - Nature biomedical …, 2020 - nature.com
Spatial transcriptomics allows for the measurement of RNA abundance at a high spatial
resolution, making it possible to systematically link the morphology of cellular …

Statistical and integrative system-level analysis of DNA methylation data

AE Teschendorff, CL Relton - Nature Reviews Genetics, 2018 - nature.com
Epigenetics plays a key role in cellular development and function. Alterations to the
epigenome are thought to capture and mediate the effects of genetic and environmental risk …

Identification of differentially methylated cell types in epigenome-wide association studies

SC Zheng, CE Breeze, S Beck, AE Teschendorff - Nature methods, 2018 - nature.com
An outstanding challenge of epigenome-wide association studies (EWASs) performed in
complex tissues is the identification of the specific cell type (s) responsible for the observed …

Epigenetics and allergy: from basic mechanisms to clinical applications

DP Potaczek, H Harb, S Michel, BA Alhamwe… - …, 2017 - Taylor & Francis
Allergic diseases are on the rise in the Western world and well-known allergy-protecting and-
driving factors such as microbial and dietary exposure, pollution and smoking mediate their …

Brain cell-type shifts in Alzheimer's disease, autism, and schizophrenia interrogated using methylomics and genetics

CX Yap, DD Vo, MG Heffel, A Bhattacharya, C Wen… - Science …, 2024 - science.org
Few neuropsychiatric disorders have replicable biomarkers, prompting high-resolution and
large-scale molecular studies. However, we still lack consensus on a more foundational …

Reference-free deconvolution of DNA methylation data and mediation by cell composition effects

EA Houseman, ML Kile, DC Christiani, TA Ince… - BMC …, 2016 - Springer
Background Recent interest in reference-free deconvolution of DNA methylation data has
led to several supervised methods, but these methods do not easily permit the interpretation …

The nasal methylome as a biomarker of asthma and airway inflammation in children

A Cardenas, JE Sordillo, SL Rifas-Shiman… - Nature …, 2019 - nature.com
The nasal cellular epigenome may serve as biomarker of airway disease and environmental
response. Here we collect nasal swabs from the anterior nares of 547 children (mean-age …

Differential methylation between ethnic sub-groups reflects the effect of genetic ancestry and environmental exposures

JM Galanter, CR Gignoux, SS Oh, D Torgerson… - elife, 2017 - elifesciences.org
Populations are often divided categorically into distinct racial/ethnic groups based on social
rather than biological constructs. Genetic ancestry has been suggested as an alternative to …