A clinical trials corpus annotated with UMLS entities to enhance the access to evidence-based medicine

L Campillos-Llanos, A Valverde-Mateos… - BMC medical informatics …, 2021 - Springer
Background The large volume of medical literature makes it difficult for healthcare
professionals to keep abreast of the latest studies that support Evidence-Based Medicine …

[HTML][HTML] A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse

N Garcelon, A Neuraz, R Salomon, H Faour… - Journal of biomedical …, 2018 - Elsevier
Introduction Clinical data warehouses are often oriented toward integration and exploration
of coded data. However narrative reports are of crucial importance for translational research …

Biomedical corpora and natural language processing on clinical text in languages other than English: a systematic review

M AlShuweihi, SA Salloum, K Shaalan - Recent advances in intelligent …, 2021 - Springer
Abstract Natural Language Processing (NLP) applications on real-life textual content require
a suitable fit for purpose corpora, which can accommodate the ambiguity of the domain …

[PDF][PDF] Overview of MedProcNER Task on Medical Procedure Detection and Entity Linking at BioASQ 2023.

S Lima-López, E Farré-Maduell, L Gascó… - CLEF (Working …, 2023 - ceur-ws.org
Recent advances in NLP techniques, the use of large language models and Transformers
are showing promising results for processing clinical content. The development of tools for …

Natural language processing: from bedside to everywhere

E Aramaki, S Wakamiya, S Yada… - Yearbook of medical …, 2022 - thieme-connect.com
Objectives: Owing to the rapid progress of natural language processing (NLP), the role of
NLP in the medical field has radically gained considerable attention from both NLP and …

A distributable German clinical corpus containing cardiovascular clinical routine doctor's letters

P Richter-Pechanski, P Wiesenbach, DM Schwab… - Scientific Data, 2023 - nature.com
We present CARDIO: DE, the first freely available and distributable large German clinical
corpus from the cardiovascular domain. CARDIO: DE encompasses 500 clinical routine …

Automatic extraction of nested entities in clinical referrals in Spanish

P Báez, F Bravo-Marquez, J Dunstan, M Rojas… - ACM Transactions on …, 2022 - dl.acm.org
Here we describe a new clinical corpus rich in nested entities and a series of neural models
to identify them. The corpus comprises de-identified referrals from the waiting list in Chilean …

Terminologies augmented recurrent neural network model for clinical named entity recognition

I Lerner, N Paris, X Tannier - Journal of biomedical informatics, 2020 - Elsevier
Objective We aimed to enhance the performance of a supervised model for clinical named-
entity recognition (NER) using medical terminologies. In order to evaluate our system in …

Temporal relation extraction in clinical texts: a systematic review

YB Gumiel, LE Silva e Oliveira, V Claveau… - ACM Computing …, 2021 - dl.acm.org
Unstructured data in electronic health records, represented by clinical texts, are a vast
source of healthcare information because they describe a patient's journey, including clinical …

Can synthetic text help clinical named entity recognition? a study of electronic health records in French

N Hiebel, O Ferret, K Fort, A Névéol - The 17th Conference of the …, 2023 - inria.hal.science
In sensitive domains, the sharing of corpora is restricted due to confidentiality, copyrights, or
trade secrets. Automatic text generation can help alleviate these issues by producing …