Advances in computational methods for ligand binding kinetics
Binding kinetic parameters can be correlated with drug efficacy, which in recent years led to
the development of various computational methods for predicting binding kinetic rates and …
the development of various computational methods for predicting binding kinetic rates and …
RNA–ligand molecular docking: Advances and challenges
With rapid advances in computer algorithms and hardware, fast and accurate virtual
screening has led to a drastic acceleration in selecting potent small molecules as drug …
screening has led to a drastic acceleration in selecting potent small molecules as drug …
The importance of binding kinetics and drug–target residence time in pharmacology
KE Knockenhauer, RA Copeland - British Journal of …, 2024 - Wiley Online Library
A dominant assumption in pharmacology throughout the 20th century has been that in vivo
target occupancy—and attendant pharmacodynamics—depends on the systemic …
target occupancy—and attendant pharmacodynamics—depends on the systemic …
Predicting biomolecular binding kinetics: A review
Biomolecular binding kinetics including the association (k on) and dissociation (k off) rates
are critical parameters for therapeutic design of small-molecule drugs, peptides, and …
are critical parameters for therapeutic design of small-molecule drugs, peptides, and …
Predicting protein–ligand binding and unbinding kinetics with biased MD simulations and coarse-graining of dynamics: Current state and challenges
S Wolf - Journal of Chemical Information and Modeling, 2023 - ACS Publications
The prediction of drug–target binding and unbinding kinetics that occur on time scales
between milliseconds and several hours is a prime challenge for biased molecular …
between milliseconds and several hours is a prime challenge for biased molecular …
Transition rates and efficiency of collective variables from time-dependent biased simulations
Simulations with adaptive time-dependent bias enable an efficient exploration of the
conformational space of a system. However, the dynamic information is altered by the bias …
conformational space of a system. However, the dynamic information is altered by the bias …