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Synthetic biology toolbox and chassis development in Bacillus subtilis
Based on technical advances in the sequencing and synthesis of genetic components as
well as the genome, significant progress has recently been made in develo** synthetic …
well as the genome, significant progress has recently been made in develo** synthetic …
[HTML][HTML] Disease diagnosis in smart healthcare: Innovation, technologies and applications
To promote sustainable development, the smart city implies a global vision that merges
artificial intelligence, big data, decision making, information and communication technology …
artificial intelligence, big data, decision making, information and communication technology …
eQuilibrator 3.0: a database solution for thermodynamic constant estimation
ME Beber, MG Gollub, D Mozaffari… - Nucleic acids …, 2022 - academic.oup.com
Abstract eQuilibrator (equilibrator. weizmann. ac. il) is a database of biochemical equilibrium
constants and Gibbs free energies, originally designed as a web-based interface. While the …
constants and Gibbs free energies, originally designed as a web-based interface. While the …
[HTML][HTML] Fundamental behaviors emerge from simulations of a living minimal cell
ZR Thornburg, DM Bianchi, TA Brier, BR Gilbert… - Cell, 2022 - cell.com
We present a whole-cell fully dynamical kinetic model (WCM) of JCVI-syn3A, a minimal cell
with a reduced genome of 493 genes that has retained few regulatory proteins or small …
with a reduced genome of 493 genes that has retained few regulatory proteins or small …
[HTML][HTML] Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints
Genome‐scale metabolic models (GEM s) are widely used to calculate metabolic
phenotypes. They rely on defining a set of constraints, the most common of which is that the …
phenotypes. They rely on defining a set of constraints, the most common of which is that the …
Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models
Knowing the catalytic turnover numbers of enzymes is essential for understanding the
growth rate, proteome composition, and physiology of organisms, but experimental data on …
growth rate, proteome composition, and physiology of organisms, but experimental data on …
Thermal proteome profiling in bacteria: probing protein state in vivo
Increasing antibiotic resistance urges for new technologies for studying microbes and
antimicrobial mechanism of action. We adapted thermal proteome profiling (TPP) to probe …
antimicrobial mechanism of action. We adapted thermal proteome profiling (TPP) to probe …
Creating new-to-nature carbon fixation: A guide
Synthetic biology aims at designing new biological functions from first principles. These new
designs allow to expand the natural solution space and overcome the limitations of naturally …
designs allow to expand the natural solution space and overcome the limitations of naturally …
A review of computational tools for design and reconstruction of metabolic pathways
Metabolic pathways reflect an organism's chemical repertoire and hence their elucidation
and design have been a primary goal in metabolic engineering. Various computational …
and design have been a primary goal in metabolic engineering. Various computational …
A bird's-eye view of enzyme evolution: chemical, physicochemical, and physiological considerations
Enzymes catalyze a vast range of reactions. Their catalytic performances, mechanisms,
global folds, and active-site architectures are also highly diverse, suggesting that enzymes …
global folds, and active-site architectures are also highly diverse, suggesting that enzymes …