An overview of the utility of population simulation software in molecular ecology
S Hoban - Molecular ecology, 2014 - Wiley Online Library
Stochastic simulation software that simultaneously model genetic, population and
environmental processes can inform many topics in molecular ecology. These include …
environmental processes can inform many topics in molecular ecology. These include …
Inference of the distribution of selection coefficients for new nonsynonymous mutations using large samples
The distribution of fitness effects (DFE) has considerable importance in population genetics.
To date, estimates of the DFE come from studies using a small number of individuals. Thus …
To date, estimates of the DFE come from studies using a small number of individuals. Thus …
Efficient pedigree recording for fast population genetics simulation
In this paper we describe how to efficiently record the entire genetic history of a population in
forwards-time, individual-based population genetics simulations with arbitrary breeding …
forwards-time, individual-based population genetics simulations with arbitrary breeding …
Determining the factors driving selective effects of new nonsynonymous mutations
The distribution of fitness effects (DFE) of new mutations plays a fundamental role in
evolutionary genetics. However, the extent to which the DFE differs across species has yet to …
evolutionary genetics. However, the extent to which the DFE differs across species has yet to …
The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms
JG Baldwin-Brown, AD Long… - Molecular biology and …, 2014 - academic.oup.com
A novel approach for dissecting complex traits is to experimentally evolve laboratory
populations under a controlled environment shift, resequence the resulting populations, and …
populations under a controlled environment shift, resequence the resulting populations, and …
forqs: forward-in-time simulation of recombination, quantitative traits and selection
D Kessner, J Novembre - Bioinformatics, 2014 - academic.oup.com
forqs is a forward-in-time simulation of recombination, quantitative traits and selection. It was
designed to investigate haplotype patterns resulting from scenarios where substantial …
designed to investigate haplotype patterns resulting from scenarios where substantial …
SELAM: simulation of epistasis and local adaptation during admixture with mate choice
R Corbett-Detig, M Jones - Bioinformatics, 2016 - academic.oup.com
SELAM is a forward time population genetic simulation program that provides a flexible
framework for simulating admixture between any number of ancestral populations. The …
framework for simulating admixture between any number of ancestral populations. The …
Robust forward simulations of recurrent hitchhiking
LH Uricchio, RD Hernandez - Genetics, 2014 - academic.oup.com
Evolutionary forces shape patterns of genetic diversity within populations and contribute to
phenotypic variation. In particular, recurrent positive selection has attracted significant …
phenotypic variation. In particular, recurrent positive selection has attracted significant …
XSim: simulation of descendants from ancestors with sequence data
Real or imputed high-density SNP genotypes are routinely used for genomic prediction and
genome-wide association studies. Many researchers are moving toward the use of actual or …
genome-wide association studies. Many researchers are moving toward the use of actual or …
Parallelizing Population Genetics Applications
C Montemuiño Sosa - 2021 - ddd.uab.cat
Amb la creixent disponibilitat de dades a escala de l'genoma per a la investigació genètica,
els genetistes de poblacions moleculars han de treballar amb models més complexos, el …
els genetistes de poblacions moleculars han de treballar amb models més complexos, el …