MicroRNAs and their diverse functions in plants
G Sun - Plant molecular biology, 2012 - Springer
Abstract microRNAs (miRNAs) are an extensive class of newly identified small RNAs, which
regulate gene expression at the post-transcriptional level by mRNA cleavage or translation …
regulate gene expression at the post-transcriptional level by mRNA cleavage or translation …
Expression profiling of microRNAs by deep sequencing
MicroRNAs are short non-coding RNAs that regulate the stability and translation of mRNAs.
Profiling experiments, using microarray or deep sequencing technology, have identified …
Profiling experiments, using microarray or deep sequencing technology, have identified …
SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data
Quality control (QC) and preprocessing are essential steps for sequencing data analysis to
ensure the accuracy of results. However, existing tools cannot provide a satisfying solution …
ensure the accuracy of results. However, existing tools cannot provide a satisfying solution …
miRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs
Abstract miRDeepFinder is a software package developed to identify and functionally
analyze plant microRNAs (miRNAs) and their targets from small RNA datasets obtained from …
analyze plant microRNAs (miRNAs) and their targets from small RNA datasets obtained from …
Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors
Plants are sessile organisms that gauge stressful conditions to ensure survival and
reproductive success. While plants in nature often encounter chronic or recurring stressful …
reproductive success. While plants in nature often encounter chronic or recurring stressful …
A microRNA superfamily regulates nucleotide binding site–leucine-rich repeats and other mRNAs
Abstract Analysis of tomato (Solanum lycopersicum) small RNA data sets revealed the
presence of a regulatory cascade affecting disease resistance. The initiators of the cascade …
presence of a regulatory cascade affecting disease resistance. The initiators of the cascade …
ShortStack: comprehensive annotation and quantification of small RNA genes
MJ Axtell - Rna, 2013 - rnajournal.cshlp.org
Small RNA sequencing allows genome-wide discovery, categorization, and quantification of
genes producing regulatory small RNAs. Many tools have been described for annotation …
genes producing regulatory small RNAs. Many tools have been described for annotation …
miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments
Background MicroRNAs (miRNAs) are small (~ 19-24nt) non-coding RNAs that play
important roles in various biological processes. To date, the next-generation sequencing …
important roles in various biological processes. To date, the next-generation sequencing …
[HTML][HTML] Kraken: a set of tools for quality control and analysis of high-throughput sequence data
New sequencing technologies pose significant challenges in terms of data complexity and
magnitude. It is essential that efficient software is developed with performance that scales …
magnitude. It is essential that efficient software is developed with performance that scales …
miR828 and miR858 regulate VvMYB114 to promote anthocyanin and flavonol accumulation in grapes
MicroRNAs are a class of non-coding small RNAs involved in the negative regulation of
gene expression, which play critical roles in developmental and metabolic pathways …
gene expression, which play critical roles in developmental and metabolic pathways …