Dissecting diagnostic heterogeneity in depression by integrating neuroimaging and genetics

AM Buch, C Liston - Neuropsychopharmacology, 2021 - nature.com
Depression is a heterogeneous and etiologically complex psychiatric syndrome, not a
unitary disease entity, encompassing a broad spectrum of psychopathology arising from …

A review on recent trends in the phosphoproteomics workflow. From sample preparation to data analysis

J Urban - Analytica Chimica Acta, 2022 - Elsevier
Phosphorylation is one of the quickest post-translational modifications that controls
downstream signaling pathways regulating processes like cell proliferation, survival, and …

Tumour kinome re-wiring governs resistance to palbociclib in oestrogen receptor positive breast cancers, highlighting new therapeutic modalities

S Pancholi, R Ribas, N Simigdala, E Schuster… - Oncogene, 2020 - nature.com
Combination of CDK4/6 inhibitors and endocrine therapy improves clinical outcome in
advanced oestrogen receptor (ER)-positive breast cancer, however relapse is inevitable …

A practical guide to interpreting and generating bottom‐up proteomics data visualizations

JP Schessner, E Voytik, I Bludau - Proteomics, 2022 - Wiley Online Library
Mass‐spectrometry based bottom‐up proteomics is the main method to analyze proteomes
comprehensively and the rapid evolution of instrumentation and data analysis has made the …

Rapid metabolic reprogramming mediated by the AMP-activated protein kinase during the lytic cycle of Toxoplasma gondii

Y Li, Z Niu, J Yang, X Yang, Y Chen, Y Li… - Nature …, 2023 - nature.com
The ubiquitous pathogen Toxoplasma gondii has a complex lifestyle with different metabolic
activities at different stages that are intimately linked to the parasitic environments. Here we …

Protein synthesis is suppressed in sporadic and familial Parkinson's disease by LRRK2

P Deshpande, D Flinkman, Y Hong… - The FASEB …, 2020 - Wiley Online Library
Gain of function LRRK2‐G2019S is the most frequent mutation found in familial and
sporadic Parkinson's disease. It is expected therefore that understanding the cellular …

PhosPiR: an automated phosphoproteomic pipeline in R

Y Hong, D Flinkman, T Suomi, S Pietilä… - Briefings in …, 2022 - academic.oup.com
Large-scale phosphoproteome profiling using mass spectrometry (MS) provides functional
insight that is crucial for disease biology and drug discovery. However, extracting biological …

Bringing CAM photosynthesis to the table: Paving the way for resilient and productive agricultural systems in a changing climate

N Perron, M Kirst, S Chen - Plant Communications, 2024 - cell.com
Modern agricultural systems are directly threatened by global climate change and the
resulting freshwater crisis. A considerable challenge in the coming years will be to develop …

ProteoArk: A One-Pot Proteomics Data Analysis and Visualization Tool for Biologists

M Nisar, SP Soman, S Sreelan, L John… - Journal of Proteome …, 2025 - ACS Publications
ProteoArk is a web-based tool that offers a range of computational pipelines for
comprehensive analysis and visualization of mass spectrometry-based proteomics data. The …

[HTML][HTML] Uncovering the dynamics of cellular responses induced by iron-carbohydrate complexes in human macrophages using quantitative proteomics and …

J Bossart, A Rippl, AEB Alston, B Flühmann… - Biomedicine & …, 2023 - Elsevier
Iron-carbohydrate complexes are widely used to treat iron deficiencies. Macrophages play a
crucial role in the uptake and fate of these nanomedicines, however, how complexed iron …