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Recent advances in metabolic engineering of Saccharomyces cerevisiae: new tools and their applications
Metabolic engineering aims to develop efficient cell factories by rewiring cellular
metabolism. As one of the most commonly used cell factories, Saccharomyces cerevisiae …
metabolism. As one of the most commonly used cell factories, Saccharomyces cerevisiae …
Synthetic biology and molecular genetics in non-conventional yeasts: current tools and future advances
Coupling the tools of synthetic biology with traditional molecular genetic techniques can
enable the rapid prototy** and optimization of yeast strains. While the era of yeast …
enable the rapid prototy** and optimization of yeast strains. While the era of yeast …
Controlling gene expression with deep generative design of regulatory DNA
Abstract Design of de novo synthetic regulatory DNA is a promising avenue to control gene
expression in biotechnology and medicine. Using mutagenesis typically requires screening …
expression in biotechnology and medicine. Using mutagenesis typically requires screening …
A highly characterized yeast toolkit for modular, multipart assembly
Saccharomyces cerevisiae is an increasingly attractive host for synthetic biology because of
its long history in industrial fermentations. However, until recently, most synthetic biology …
its long history in industrial fermentations. However, until recently, most synthetic biology …
Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure
Understanding the genetic regulatory code governing gene expression is an important
challenge in molecular biology. However, how individual coding and non-coding regions of …
challenge in molecular biology. However, how individual coding and non-coding regions of …
Genetic circuit design automation for yeast
Cells can be programmed to monitor and react to their environment using genetic circuits.
Design automation software maps a desired circuit function to a DNA sequence, a process …
Design automation software maps a desired circuit function to a DNA sequence, a process …
Increased CO2 fixation enables high carbon-yield production of 3-hydroxypropionic acid in yeast
CO2 fixation plays a key role to make biobased production cost competitive. Here, we use 3-
hydroxypropionic acid (3-HP) to showcase how CO2 fixation enables approaching …
hydroxypropionic acid (3-HP) to showcase how CO2 fixation enables approaching …
Automated design of thousands of nonrepetitive parts for engineering stable genetic systems
Engineered genetic systems are prone to failure when their genetic parts contain repetitive
sequences. Designing many nonrepetitive genetic parts with desired functionalities remains …
sequences. Designing many nonrepetitive genetic parts with desired functionalities remains …
The development and characterization of synthetic minimal yeast promoters
H Redden, HS Alper - Nature communications, 2015 - nature.com
Synthetic promoters, especially minimally sized, are critical for advancing fungal synthetic
biology. Fungal promoters often span hundreds of base pairs, nearly ten times the amount of …
biology. Fungal promoters often span hundreds of base pairs, nearly ten times the amount of …
Advances in promoter engineering: novel applications and predefined transcriptional control
AP Cazier, J Blazeck - Biotechnology Journal, 2021 - Wiley Online Library
Synthetic biology continues to progress by relying on more robust tools for transcriptional
control, of which promoters are the most fundamental component. Numerous studies have …
control, of which promoters are the most fundamental component. Numerous studies have …