Quantitative proteomic analysis of histone modifications

H Huang, S Lin, BA Garcia, Y Zhao - Chemical reviews, 2015 - ACS Publications
Several mechanisms have been proposed for histone marks to exert their functions,
including altering the physical properties of nucleosomes by neutralization of charge via …

Proteomics by mass spectrometry: approaches, advances, and applications

JR Yates, CI Ruse… - Annual review of …, 2009 - annualreviews.org
Mass spectrometry (MS) is the most comprehensive and versatile tool in large-scale
proteomics. In this review, we dissect the overall framework of the MS experiment into its key …

BCAA-nitrogen flux in brown fat controls metabolic health independent of thermogenesis

ARP Verkerke, D Wang, N Yoshida, ZH Taxin, X Shi… - Cell, 2024 - cell.com
Brown adipose tissue (BAT) is best known for thermogenesis. Rodent studies demonstrated
that enhanced BAT thermogenesis is tightly associated with increased energy expenditure …

High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform

SJ Humphrey, O Karayel, DE James, M Mann - Nature protocols, 2018 - nature.com
Mass spectrometry has transformed the field of cell signaling by enabling global studies of
dynamic protein phosphorylation ('phosphoproteomics'). Recent developments are enabling …

A peptide hormone and its receptor protein kinase regulate plant cell expansion

M Haruta, G Sabat, K Stecker, BB Minkoff… - Science, 2014 - science.org
Plant cells are immobile; thus, plant growth and development depend on cell expansion
rather than cell migration. The molecular mechanism by which the plasma membrane …

Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase

J Van Leene, C Han, A Gadeyne, D Eeckhout… - Nature plants, 2019 - nature.com
The target of rapamycin (TOR) kinase is a conserved regulatory hub that translates
environmental and nutritional information into permissive or restrictive growth decisions …

Light-induced stomatal opening requires phosphorylation of the C-terminal autoinhibitory domain of plasma membrane H+-ATPase

S Fuji, S Yamauchi, N Sugiyama, T Kohchi… - Nature …, 2024 - nature.com
Plasma membrane H+-ATPase provides the driving force for light-induced stomatal opening.
However, the mechanisms underlying the regulation of its activity remain unclear. Here, we …

Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis

T Umezawa, N Sugiyama, M Mizoguchi… - Proceedings of the …, 2009 - pnas.org
Abscisic acid (ABA) signaling is important for stress responses and developmental
processes in plants. A subgroup of protein phosphatase 2C (group A PP2C) or SNF1-related …

Genetics and Phosphoproteomics Reveal a Protein Phosphorylation Network in the Abscisic Acid Signaling Pathway in Arabidopsis thaliana

T Umezawa, N Sugiyama, F Takahashi… - Science …, 2013 - science.org
Abscisic acid (ABA) is a phytohormone that regulates diverse plant processes, including
seed germination and the response to dehydration. In Arabidopsis thaliana, protein kinases …

Robust phosphoproteome enrichment using monodisperse microsphere–based immobilized titanium (IV) ion affinity chromatography

H Zhou, M Ye, J Dong, E Corradini, A Cristobal… - Nature protocols, 2013 - nature.com
Mass spectrometry (MS)-based proteomics has become the preferred tool for the analysis of
protein phosphorylation. To be successful at such an endeavor, there is a requirement for an …