Bistability, epigenetics, and bet-hedging in bacteria

JW Veening, WK Smits, OP Kuipers - Annu. Rev. Microbiol., 2008 - annualreviews.org
Clonal populations of microbial cells often show a high degree of phenotypic variability
under homogeneous conditions. Stochastic fluctuations in the cellular components that …

Promoter engineering: recent advances in controlling transcription at the most fundamental level

J Blazeck, HS Alper - Biotechnology journal, 2013 - Wiley Online Library
Synthetic control of gene expression is critical for metabolic engineering efforts. Specifically,
precise control of key pathway enzymes (heterologous or native) can help maximize product …

Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure

J Zrimec, CS Börlin, F Buric, AS Muhammad… - Nature …, 2020 - nature.com
Understanding the genetic regulatory code governing gene expression is an important
challenge in molecular biology. However, how individual coding and non-coding regions of …

Engineering dynamic pathway regulation using stress-response promoters

RH Dahl, F Zhang, J Alonso-Gutierrez, E Baidoo… - Nature …, 2013 - nature.com
Heterologous pathways used in metabolic engineering may produce intermediates toxic to
the cell. Dynamic control of pathway enzymes could prevent the accumulation of these …

Design, construction and characterization of a set of insulated bacterial promoters

JH Davis, AJ Rubin, RT Sauer - Nucleic acids research, 2011 - academic.oup.com
We have generated a series of variable-strength, constitutive, bacterial promoters that act
predictably in different sequence contexts, span two orders of magnitude in strength and …

An engineered strong promoter for streptomycetes

W Wang, X Li, J Wang, S **ang, X Feng… - Applied and …, 2013 - journals.asm.org
Well-characterized promoters are essential tools for metabolic engineering and synthetic
biology. In Streptomyces coelicolor, the native kasO p is a temporally expressed promoter …

Diversity-based, model-guided construction of synthetic gene networks with predicted functions

T Ellis, X Wang, JJ Collins - Nature biotechnology, 2009 - nature.com
Engineering artificial gene networks from modular components is a major goal of synthetic
biology. However, the construction of gene networks with predictable functions remains …

Introduction and expression of genes for metabolic engineering applications in Saccharomyces cerevisiae

NA Da Silva, S Srikrishnan - FEMS yeast research, 2012 - academic.oup.com
Metabolic pathway engineering in the yeast Saccharomyces cerevisiae leads to improved
production of a wide range of compounds, ranging from ethanol (from biomass) to natural …

Tn7-Based Device for Calibrated Heterologous Gene Expression in Pseudomonas putida

S Zobel, I Benedetti, L Eisenbach… - ACS synthetic …, 2015 - ACS Publications
The soil bacterium Pseudomonas putida is increasingly attracting considerable interest as a
platform for advanced metabolic engineering through synthetic biology approaches …

Bioengineering of plant (tri)terpenoids: from metabolic engineering of plants to synthetic biology in vivo and in vitro

T Moses, J Pollier, JM Thevelein… - New Phytologist, 2013 - Wiley Online Library
Terpenoids constitute a large and diverse class of natural products that serve many
functions in nature. Most of the tens of thousands of the discovered terpenoids are …