Optimal transport for single-cell and spatial omics
High-throughput single-cell profiling provides an unprecedented ability to uncover the
molecular states of millions of cells. These technologies are, however, destructive to cells …
molecular states of millions of cells. These technologies are, however, destructive to cells …
Diffusion Schrödinger bridge matching
Solving transport problems, ie finding a map transporting one given distribution to another,
has numerous applications in machine learning. Novel mass transport methods motivated …
has numerous applications in machine learning. Novel mass transport methods motivated …
Generative modeling with phase stochastic bridges
Diffusion models (DMs) represent state-of-the-art generative models for continuous inputs.
DMs work by constructing a Stochastic Differential Equation (SDE) in the input space (ie …
DMs work by constructing a Stochastic Differential Equation (SDE) in the input space (ie …
A computational framework for solving Wasserstein Lagrangian flows
The dynamical formulation of the optimal transport can be extended through various choices
of the underlying geometry ($\textit {kinetic energy} $), and the regularization of density …
of the underlying geometry ($\textit {kinetic energy} $), and the regularization of density …
Learning diffusion at lightspeed
Diffusion regulates numerous natural processes and the dynamics of many successful
generative models. Existing models to learn the diffusion terms from observational data rely …
generative models. Existing models to learn the diffusion terms from observational data rely …
Generative modeling for time series via Schr {\" o} dinger bridge
We propose a novel generative model for time series based on Schr {\" o} dinger bridge (SB)
approach. This consists in the entropic interpolation via optimal transport between a …
approach. This consists in the entropic interpolation via optimal transport between a …
Quantum state generation with structure-preserving diffusion model
This article considers the generative modeling of the states of quantum systems, and an
approach based on denoising diffusion model is proposed. The key contribution is an …
approach based on denoising diffusion model is proposed. The key contribution is an …
Correlational Lagrangian Schr\" odinger Bridge: Learning Dynamics with Population-Level Regularization
Accurate modeling of system dynamics holds intriguing potential in broad scientific fields
including cytodynamics and fluid mechanics. This task often presents significant challenges …
including cytodynamics and fluid mechanics. This task often presents significant challenges …
Variational Schr\" odinger Momentum Diffusion
The momentum Schr\" odinger Bridge (mSB) has emerged as a leading method for
accelerating generative diffusion processes and reducing transport costs. However, the lack …
accelerating generative diffusion processes and reducing transport costs. However, the lack …
Multi-marginal Schr\" odinger Bridges with Iterative Reference Refinement
Practitioners often aim to infer an unobserved population trajectory using sample snapshots
at multiple time points. Eg, given single-cell sequencing data, scientists would like to learn …
at multiple time points. Eg, given single-cell sequencing data, scientists would like to learn …