Biochemistry and molecular biology of lithotrophic sulfur oxidation by taxonomically and ecologically diverse bacteria and archaea

W Ghosh, B Dam - FEMS microbiology reviews, 2009 - academic.oup.com
Lithotrophic sulfur oxidation is an ancient metabolic process. Ecologically and taxonomically
diverged prokaryotes have differential abilities to utilize different reduced sulfur compounds …

Sulfur-driven autotrophic denitrification: diversity, biochemistry, and engineering applications

MF Shao, T Zhang, HHP Fang - Applied microbiology and biotechnology, 2010 - Springer
Sulfur-driven autotrophic denitrification refers to the chemolithotrophic process coupling
denitrification with the oxidation of reduced inorganic sulfur compounds. Ever since 1904 …

A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index

RA Barco, GM Garrity, JJ Scott, JP Amend, KH Nealson… - MBio, 2020 - Am Soc Microbiol
Genus assignment is fundamental in the characterization of microbes, yet there is currently
no unambiguous way to demarcate genera solely using standard genomic relatedness …

Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications

J Valdés, I Pedroso, R Quatrini, RJ Dodson, H Tettelin… - BMC genomics, 2008 - Springer
Background Acidithiobacillus ferrooxidans is a major participant in consortia of
microorganisms used for the industrial recovery of copper (bioleaching or biomining). It is a …

Phylogeny of gammaproteobacteria

KP Williams, JJ Gillespie, BWS Sobral… - Journal of …, 2010 - Am Soc Microbiol
The phylogeny of the large bacterial class Gammaproteobacteria has been difficult to
resolve. Here we apply a telesco** multiprotein approach to the problem for 104 diverse …

Multiple Rubisco forms in proteobacteria: their functional significance in relation to CO2 acquisition by the CBB cycle

MR Badger, EJ Bek - Journal of experimental botany, 2008 - academic.oup.com
Rubisco is the predominant enzymatic mechanism in the biosphere by which autotrophic
bacteria, algae, and terrestrial plants fix CO2 into organic biomass via the Calvin–Benson …

Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?

JH Paul - The ISME journal, 2008 - academic.oup.com
Bacteriophages are realized to be numerous and important components of oceanic food
webs principally because of their lytic capabilities. The subtle changes that temperate …

Sulfur metabolism in phototrophic sulfur bacteria

NU Frigaard, C Dahl - Advances in microbial physiology, 2008 - Elsevier
Phototrophic sulfur bacteria are characterized by oxidizing various inorganic sulfur
compounds for use as electron donors in carbon dioxide fixation during anoxygenic …

Peptidoglycan crosslinking relaxation promotes Helicobacter pylori's helical shape and stomach colonization

LK Sycuro, Z Pincus, KD Gutierrez, J Biboy, CA Stern… - Cell, 2010 - cell.com
The mechanisms by which bacterial cells generate helical cell shape and its functional role
are poorly understood. Helical shape of the human pathogen Helicobacter pylori may …

Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance

S Nakagawa, K Takai - FEMS microbiology ecology, 2008 - academic.oup.com
Deep-sea vents support productive ecosystems driven primarily by chemoautotrophs.
Chemoautotrophs are organisms that are able to fix inorganic carbon using a chemical …