Rigidity through a projective lens

A Nixon, B Schulze, W Whiteley - Applied Sciences, 2021 - mdpi.com
Featured Application The material in this article draws on, and has applications across a
range of applications in civil and structural engineering, mechanical engineering, computer …

Surface-induced dissociation of homotetramers with D2 symmetry yields their assembly pathways and characterizes the effect of ligand binding

RS Quintyn, J Yan, VH Wysocki - Chemistry & biology, 2015 - cell.com
Understanding of protein complex assembly and the effect of ligand binding on their native
topologies is integral to discerning how alterations in their architecture can affect function …

Quantifying the intrinsic mechanical flexibility of crystalline materials

M Bhogra, AL Goodwin, AK Cheetham, UV Waghmare - Physical Review B, 2023 - APS
The flexibility of a solid reflects its ability to accommodate reversible changes in size or
shape. While the term is commonly used in describing physical and biological systems, a …

[BOOK][B] Singularities of robot mechanisms: Numerical computation and avoidance path planning

O Bohigas, M Manubens, L Ros - 2016 - books.google.com
This book presents the singular configurations associated with a robot mechanism, together
with robust methods for their computation, interpretation, and avoidance path planning …

Kinematic topology and constraints of multi-loop linkages

A Müller - Robotica, 2018 - cambridge.org
Modeling the instantaneous kinematics of lower pair linkages using joint screws and the
finite kinematics with Lie group concepts is well established on a solid theoretical …

Universal folding pathways of polyhedron nets

PM Dodd, PF Damasceno… - Proceedings of the …, 2018 - National Acad Sciences
Low-dimensional objects such as molecular strands, ladders, and sheets have intrinsic
features that affect their propensity to fold into 3D objects. Understanding this relationship …

[PDF][PDF] Structural and functional analysis of proteins using rigidity theory

A Sljoka - … Computation Paradigm: Algorithmic Revolution in the …, 2022 - library.oapen.org
Over the past two decades, we have witnessed an unprecedented explosion in available
biological data. In the age of big data, large biological datasets have created an urgent need …

Probing allosteric mechanism with long-range rigidity transmission across protein networks

A Sljoka - Allostery: Methods and Protocols, 2021 - Springer
Allosteric transmission refers to regulation of protein function at a distance.“Allostery”
involves regulation and/or signal transduction induced by a perturbation event. Allostery …

Rigidity of symmetric frameworks

B Schulze, W Whiteley - Handbook of Discrete and Computational …, 2017 - taylorfrancis.com
Since symmetry is ubiquitous in both man-made structures (eg, buildings or mechanical
linkages) and in structures found in nature (eg, proteins or crystals), it is natural to consider …

Ebola virus VP35 protein: modeling of the tetrameric structure and an analysis of its interaction with human PKR

A Banerjee, P Mitra - Journal of Proteome Research, 2020 - ACS Publications
The Viral Protein 35 (VP35), a crucial protein of the Zaire Ebolavirus (EBOV), interacts with a
plethora of human proteins to cripple the human immune system. Despite its importance, the …