Ribosome biogenesis factors—from names to functions

K Dörner, C Ruggeri, I Zemp, U Kutay - The EMBO journal, 2023 - embopress.org
The assembly of ribosomal subunits is a highly orchestrated process that involves a huge
cohort of accessory factors. Most eukaryotic ribosome biogenesis factors were first identified …

Eukaryotic ribosome assembly

A Vanden Broeck, S Klinge - Annual Review of Biochemistry, 2024 - annualreviews.org
During the last ten years, developments in cryo–electron microscopy have transformed our
understanding of eukaryotic ribosome assembly. As a result, the field has advanced from a …

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

D Szklarczyk, AL Gable, D Lyon, A Junge… - Nucleic acids …, 2019 - academic.oup.com
Proteins and their functional interactions form the backbone of the cellular machinery. Their
connectivity network needs to be considered for the full understanding of biological …

Ribosome assembly coming into focus

S Klinge, JL Woolford Jr - Nature reviews Molecular cell biology, 2019 - nature.com
In the past 25 years, genetic and biochemical analyses of ribosome assembly in yeast have
identified most of the factors that participate in this complex pathway and have generated …

Eukaryotic ribosome assembly

J Baßler, E Hurt - Annual review of biochemistry, 2019 - annualreviews.org
Ribosomes, which synthesize the proteins of a cell, comprise ribosomal RNA and ribosomal
proteins, which coassemble hierarchically during a process termed ribosome biogenesis …

Purification of cross-linked RNA-protein complexes by phenol-toluol extraction

EC Urdaneta, CH Vieira-Vieira, T Hick… - Nature …, 2019 - nature.com
Recent methodological advances allowed the identification of an increasing number of RNA-
binding proteins (RBPs) and their RNA-binding sites. Most of those methods rely, however …

Principles of human pre-60S biogenesis

A Vanden Broeck, S Klinge - Science, 2023 - science.org
During the early stages of human large ribosomal subunit (60 S) biogenesis, an ensemble of
assembly factors establishes and fine-tunes the essential RNA functional centers of pre-60 S …

Hypoxia preconditioning of adipose stem cell-derived exosomes loaded in gelatin methacryloyl (GelMA) promote type H angiogenesis and osteoporotic fracture repair

X Li, S Fang, S Wang, Y **e, Y **a, P Wang… - Journal of …, 2024 - Springer
The challenges posed by delayed atrophic healing and nonunion stand as formidable
obstacles in osteoporotic fracture treatment. The processes of type H angiogenesis and …

[HTML][HTML] Helicase-dependent RNA decay illuminated by a cryo-EM structure of a human nuclear RNA exosome-MTR4 complex

EM Weick, MR Puno, K Januszyk, JC Zinder… - Cell, 2018 - cell.com
The ribonucleolytic RNA exosome interacts with RNA helicases to degrade RNA. To
understand how the 3′ to 5′ Mtr4 helicase engages RNA and the nuclear exosome, we …

Structural basis of mRNA decay by the human exosome–ribosome supercomplex

A Kögel, A Keidel, MJ Loukeri, CC Kuhn, LM Langer… - Nature, 2024 - nature.com
The interplay between translation and mRNA decay is widespread in human cells,–. In
quality-control pathways, exonucleolytic degradation of mRNA associated with translating …