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[HTML][HTML] From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures
We now need more than ever to make genome analysis more intelligent. We need to read,
analyze, and interpret our genomes not only quickly, but also accurately and efficiently …
analyze, and interpret our genomes not only quickly, but also accurately and efficiently …
Long-read map** to repetitive reference sequences using Winnowmap2
Abstract Approximately 5–10% of the human genome remains inaccessible due to the
presence of repetitive sequences such as segmental duplications and tandem repeat arrays …
presence of repetitive sequences such as segmental duplications and tandem repeat arrays …
[КНИГА][B] Accelerated Systems for Portable DNA Sequencing
H Sadasivan - 2023 - books.google.com
The MinION is a revolutionary handheld DNA sequencer that is inexpensive, portable, and
can perform real-time sequencing. MinION is increasingly used in Precision Medicine …
can perform real-time sequencing. MinION is increasingly used in Precision Medicine …
GenStore: A high-performance in-storage processing system for genome sequence analysis
Read map** is a fundamental step in many genomics applications. It is used to identify
potential matches and differences between fragments (called reads) of a sequenced …
potential matches and differences between fragments (called reads) of a sequenced …
Accelerating Minimap2 for accurate long read alignment on GPUs
Long read sequencing technology is becoming increasingly popular for Precision Medicine
applications like Whole Genome Sequencing (WGS) and microbial abundance estimation …
applications like Whole Genome Sequencing (WGS) and microbial abundance estimation …
Accelerating minimap2 for long-read sequencing applications on modern CPUs
Long-read sequencing is now routinely used at scale for genomics and transcriptomics
applications. Map** long reads or a draft genome assembly to a reference sequence is …
applications. Map** long reads or a draft genome assembly to a reference sequence is …
WFA-GPU: gap-affine pairwise read-alignment using GPUs
Motivation Advances in genomics and sequencing technologies demand faster and more
scalable analysis methods that can process longer sequences with higher accuracy …
scalable analysis methods that can process longer sequences with higher accuracy …
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis
Generating the hash values of short subsequences, called seeds, enables quickly
identifying similarities between genomic sequences by matching seeds with a single lookup …
identifying similarities between genomic sequences by matching seeds with a single lookup …
GenStore: A High-Performance and Energy-Efficient In-Storage Computing System for Genome Sequence Analysis
Block Aligner: an adaptive SIMD-accelerated aligner for sequences and position-specific scoring matrices
Motivation Efficiently aligning sequences is a fundamental problem in bioinformatics. Many
recent algorithms for computing alignments through Smith–Waterman–Gotoh dynamic …
recent algorithms for computing alignments through Smith–Waterman–Gotoh dynamic …