[HTML][HTML] Boosting the full potential of PyMOL with structural biology plugins

S Rosignoli, A Paiardini - Biomolecules, 2022 - mdpi.com
Over the past few decades, the number of available structural bioinformatics pipelines,
libraries, plugins, web resources and software has increased exponentially and become …

Oxidative cyclization in natural product biosynthesis

MC Tang, Y Zou, K Watanabe, CT Walsh… - Chemical …, 2017 - ACS Publications
Oxidative cyclizations are important transformations that occur widely during natural product
biosynthesis. The transformations from acyclic precursors to cyclized products can afford …

Chain release mechanisms in polyketide and non-ribosomal peptide biosynthesis

RF Little, C Hertweck - Natural product reports, 2022 - pubs.rsc.org
Review covering up to mid-2021 The structure of polyketide and non-ribosomal peptide
natural products is strongly influenced by how they are released from their biosynthetic …

Catalysis and Electron Transfer in De Novo Designed Metalloproteins

KJ Koebke, TBJ Pinter, WC Pitts, VL Pecoraro - Chemical reviews, 2022 - ACS Publications
One of the hallmark advances in our understanding of metalloprotein function is showcased
in our ability to design new, non-native, catalytically active protein scaffolds. This review …

FAD-dependent enzyme-catalysed intermolecular [4+ 2] cycloaddition in natural product biosynthesis

L Gao, C Su, X Du, R Wang, S Chen, Y Zhou, C Liu… - Nature Chemistry, 2020 - nature.com
Abstract The Diels–Alder reaction is one of the most powerful and widely used methods in
synthetic chemistry for the stereospecific construction of carbon–carbon bonds. Despite the …

The fourth wave of biocatalysis is approaching

UT Bornscheuer - … Transactions of the Royal Society A …, 2018 - royalsocietypublishing.org
Biocatalysis has undergone a tremendous development in the past few years. A plethora of
methods enable the rather rapid tailored-design of an enzyme for a targeted reaction such …

High activity and efficient turnover by a simple, self-assembled “artificial Diels–Alderase”

V Martí-Centelles, AL Lawrence… - Journal of the American …, 2018 - ACS Publications
The Diels–Alder (DA) reaction is a cornerstone of synthesis, yet Nature does not use
catalysts for intermolecular [4+ 2] cycloadditions. Attempts to create artificial “Diels …

Efficient Lewis acid catalysis of an abiological reaction in a de novo protein scaffold

S Basler, S Studer, Y Zou, T Mori, Y Ota, A Camus… - Nature Chemistry, 2021 - nature.com
New enzyme catalysts are usually engineered by repurposing the active sites of natural
proteins. Here we show that design and directed evolution can be used to transform a non …

BH9, a new comprehensive benchmark data set for barrier heights and reaction energies: Assessment of density functional approximations and basis set …

VK Prasad, Z Pei, S Edelmann… - Journal of chemical …, 2021 - ACS Publications
The calculation of accurate reaction energies and barrier heights is essential in
computational studies of reaction mechanisms and thermochemistry. To assess methods …

Natural [4+ 2]-Cyclases

B Jeon, SA Wang, MW Ruszczycky, H Liu - Chemical reviews, 2017 - ACS Publications
[4+ 2]-Cycloadditions are increasingly being recognized in the biosynthetic pathways of
many structurally complex natural products. A relatively small collection of enzymes from …