DNABP: Identification of DNA-binding proteins based on feature selection using a random forest and predicting binding residues

X Ma, J Guo, X Sun - PloS one, 2016‏ - journals.plos.org
DNA-binding proteins are fundamentally important in cellular processes. Several
computational-based methods have been developed to improve the prediction of DNA …

Identification of DNA‐Binding Proteins Using Support Vector Machine with Sequence Information

X Ma, J Wu, X Xue - Computational and Mathematical Methods …, 2013‏ - Wiley Online Library
DNA‐binding proteins are fundamentally important in understanding cellular processes.
Thus, the identification of DNA‐binding proteins has the particularly important practical …

Deep-BSC: predicting raw DNA binding pattern in Arabidopsis thaliana

SAS Bukhari, A Razzaq, J Jabeen, S Khan… - Current …, 2021‏ - ingentaconnect.com
Background: With the rapid development of the sequencing methods in recent years,
binding sites have been systematically identified in such projects as Nested-MICA and …

gDNA-Prot: Predict DNA-binding proteins by employing support vector machine and a novel numerical characterization of protein sequence

Y Zhang, W Zheng, S Liu, C Zhao - Journal of Theoretical Biology, 2016‏ - Elsevier
DNA-binding proteins are the functional proteins in cells, which play an important role in
various essential biological activities. An effective and fast computational method gDNA-Prot …

Fast construction of relational features for machine learning

O Kuželka - 2013‏ - search.proquest.com
This thesis deals with the problem of making construction of relational features more
efficient. Specifically, it focuses on the situations when we know or assume that a good set of …

INTERACT-O-FINDER: A Tool for Prediction of DNA-Binding Proteins Using Sequence Features

M Samant, M Jethva, Y Hasija - International Journal of Peptide Research …, 2015‏ - Springer
Protein–DNA interactions carry out many important regulatory functions in our body which
are essential for growth and survival. The molecular level understanding of these …

Prediction of DNA-Binding Propensity of Proteins Using Machine Learning

A Szabóová - 2013‏ - search.proquest.com
The process of protein-DNA interaction has been an important subject of recent
bioinformatics research. The goal of this thesis is to find an accurate model for the prediction …

[PDF][PDF] Prediction on DNA Binding Sequence in Deep Learning Approach

T Akter, LY Pinky, MM Islam… - International Journal of …, 2019‏ - researchgate.net
Prediction of DNA-binding proteins from sequence information is the most challenging tasks
in genome annotation. The principal study of our research is to determine DNA-binding …

Enhanced Prediction of DNA-Binding Proteins and Classes

HA Maghawry, MGM Mostafa, MH Abdul-Aziz… - … Optimization in Biology …, 2015‏ - Springer
Predicting DNA-binding proteins computationally based on proteins features is a very
challenging process. This is due to the diversity of DNA-binding patterns and classes …

[PDF][PDF] mRNA and miRNA Data Integration for Accurate Molecular Classification

J Zahálka - 2013‏ - cyber.felk.cvut.cz
Classification of mRNA expression data in order to determine the presence of a severe
disease is an active topic of bioinformatic research. In recent years, the newly-discovered …