[HTML][HTML] Epithelial-mesenchymal transitions in development and disease

JP Thiery, H Acloque, RYJ Huang, MA Nieto - cell, 2009 - cell.com
The epithelial to mesenchymal transition (EMT) plays crucial roles in the formation of the
body plan and in the differentiation of multiple tissues and organs. EMT also contributes to …

Emerging properties of animal gene regulatory networks

EH Davidson - Nature, 2010 - nature.com
Gene regulatory networks (GRNs) provide system level explanations of developmental and
physiological functions in the terms of the genomic regulatory code. Depending on their …

Biological autonomy

A Moreno, M Mossio - A philo, 2015 - Springer
If we were to point out in a few words what characterises the phenomenon of life, we would
probably mention the amazing plasticity and robustness of living systems, the innumerable …

Studying and modelling dynamic biological processes using time-series gene expression data

Z Bar-Joseph, A Gitter, I Simon - Nature Reviews Genetics, 2012 - nature.com
Biological processes are often dynamic, thus researchers must monitor their activity at
multiple time points. The most abundant source of information regarding such dynamic …

[BOOK][B] Organism and environment: ecological development, niche construction, and adaptation

SE Sultan - 2015 - books.google.com
Over the past decade, advances in both molecular developmental biology and evolutionary
ecology have made possible a new understanding of organisms as dynamic systems …

The evolution of hierarchical gene regulatory networks

DH Erwin, EH Davidson - Nature Reviews Genetics, 2009 - nature.com
Comparative developmental evidence indicates that reorganizations in developmental gene
regulatory networks (GRNs) underlie evolutionary changes in animal morphology, including …

Evolution of gene regulatory networks controlling body plan development

IS Peter, EH Davidson - Cell, 2011 - cell.com
Evolutionary change in animal morphology results from alteration of the functional
organization of the gene regulatory networks (GRNs) that control development of the body …

Esrrb is a direct Nanog target gene that can substitute for Nanog function in pluripotent cells

N Festuccia, R Osorno, F Halbritter, V Karwacki-Neisius… - Cell stem cell, 2012 - cell.com
Embryonic stem cell (ESC) self-renewal efficiency is determined by the level of Nanog
expression. However, the mechanisms by which Nanog functions remain unclear, and in …

Systems medicine: the future of medical genomics and healthcare

C Auffray, Z Chen, L Hood - Genome medicine, 2009 - Springer
High-throughput technologies for DNA sequencing and for analyses of transcriptomes,
proteomes and metabolomes have provided the foundations for deciphering the structure …

[HTML][HTML] Animal transcription networks as highly connected, quantitative continua

MD Biggin - Developmental cell, 2011 - cell.com
To understand how transcription factors function, it is essential to determine the range of
genes that they each bind and regulate in vivo. Here I review evidence that most animal …