[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …

[HTML][HTML] How the war in Ukraine affects food security

W Leal Filho, M Fedoruk, JH Paulino Pires Eustachio… - Foods, 2023 - mdpi.com
The war in Ukraine has caused severe disruption to national and worldwide food supplies.
Ukraine is a major exporter of wheat, maize, and oilseeds, staples that are now suffering a …

Priorities for ocean microbiome research

Tara Ocean Foundation Abreu Andre 1 Bourgois … - Nature …, 2022 - nature.com
Microbial communities have essential roles in ocean ecology and planetary health.
Microbes participate in nutrient cycles, remove huge quantities of carbon dioxide from the air …

[HTML][HTML] Encapsulated in sediments: eDNA deciphers the ecosystem history of one of the most polluted European marine sites

IB Angeles, ML Romero-Martínez, M Cavaliere… - Environment …, 2023 - Elsevier
The Anthropocene is characterized by dramatic ecosystem changes driven by human
activities. The impact of these activities can be assessed by different geochemical and …

Mock community experiments can inform on the reliability of eDNA metabarcoding data: a case study on marine phytoplankton

N Marinchel, A Marchesini, D Nardi, M Girardi… - Scientific Reports, 2023 - nature.com
Environmental DNA metabarcoding is increasingly implemented in biodiversity monitoring,
including phytoplankton studies. Using 21 mock communities composed of seven unicellular …

Sedimentary ancient DNA: a new paleogenomic tool for reconstructing the history of marine ecosystems

NL Nguyen, D Devendra, N Szymańska… - Frontiers in Marine …, 2023 - frontiersin.org
Sedimentary ancient DNA (seda DNA) offers a novel retrospective approach to
reconstructing the history of marine ecosystems over geological timescales. Until now, the …

Seasonal dynamics of marine protist communities in tidally mixed coastal waters

M Caracciolo, F Rigaut‐Jalabert, S Romac… - Molecular …, 2022 - Wiley Online Library
Major seasonal community reorganizations and associated biomass variations are
landmarks of plankton ecology. However, the processes of plankton community turnover …

Influence of global environmental change on plankton

JA Raven, J Beardall - Journal of Plankton Research, 2021 - academic.oup.com
Much has been published on the effects of ocean acidification on plankton since the original
Royal Society 2005 report. In addition to direct effects on primary production, it is clear that …

Spatio-temporal changes of small protist and free-living bacterial communities in a temperate dimictic lake: insights from metabarcoding and machine learning

M Karlicki, A Bednarska, P Hałakuc… - FEMS Microbiology …, 2024 - academic.oup.com
Microbial communities, which include prokaryotes and protists, play an important role in
aquatic ecosystems and influence ecological processes. To understand these communities …

[HTML][HTML] Apparent biogeographical trends in Alexandrium blooms for northern Europe: identifying links to climate change and effective adaptive actions

K Klemm, A Cembella, D Clarke, C Cusack, L Arneborg… - Harmful Algae, 2022 - Elsevier
Abstract The marine dinoflagellate Alexandrium Halim represents perhaps the most
significant and intensively studied genus with respect to species diversity, life history …