A new age in protein design empowered by deep learning
The rapid progress in the field of deep learning has had a significant impact on protein
design. Deep learning methods have recently produced a breakthrough in protein structure …
design. Deep learning methods have recently produced a breakthrough in protein structure …
De novo design of protein structure and function with RFdiffusion
There has been considerable recent progress in designing new proteins using deep-
learning methods,,,,,,,–. Despite this progress, a general deep-learning framework for protein …
learning methods,,,,,,,–. Despite this progress, a general deep-learning framework for protein …
Diffdock: Diffusion steps, twists, and turns for molecular docking
Predicting the binding structure of a small molecule ligand to a protein--a task known as
molecular docking--is critical to drug design. Recent deep learning methods that treat …
molecular docking--is critical to drug design. Recent deep learning methods that treat …
Antigen-specific antibody design and optimization with diffusion-based generative models for protein structures
Antibodies are immune system proteins that protect the host by binding to specific antigens
such as viruses and bacteria. The binding between antibodies and antigens is mainly …
such as viruses and bacteria. The binding between antibodies and antigens is mainly …
SE (3) diffusion model with application to protein backbone generation
The design of novel protein structures remains a challenge in protein engineering for
applications across biomedicine and chemistry. In this line of work, a diffusion model over …
applications across biomedicine and chemistry. In this line of work, a diffusion model over …
Antigen-specific antibody design via direct energy-based preference optimization
Antibody design, a crucial task with significant implications across various disciplines such
as therapeutics and biology, presents considerable challenges due to its intricate nature. In …
as therapeutics and biology, presents considerable challenges due to its intricate nature. In …
Diffusion models in protein structure and docking
Generative AI is rapidly transforming the frontier of research in computational structural
biology. Indeed, recent successes have substantially advanced protein design and drug …
biology. Indeed, recent successes have substantially advanced protein design and drug …
Se (3) diffusion model-based point cloud registration for robust 6d object pose estimation
In this paper, we introduce an SE (3) diffusion model-based point cloud registration
framework for 6D object pose estimation in real-world scenarios. Our approach formulates …
framework for 6D object pose estimation in real-world scenarios. Our approach formulates …
Mirror diffusion models for constrained and watermarked generation
Modern successes of diffusion models in learning complex, high-dimensional data
distributions are attributed, in part, to their capability to construct diffusion processes with …
distributions are attributed, in part, to their capability to construct diffusion processes with …
Towards predicting equilibrium distributions for molecular systems with deep learning
Advances in deep learning have greatly improved structure prediction of molecules.
However, many macroscopic observations that are important for real-world applications are …
However, many macroscopic observations that are important for real-world applications are …