Aptamer–protein interactions: from regulation to biomolecular detection

C Ji, J Wei, L Zhang, X Hou, J Tan, Q Yuan… - Chemical …, 2023 - ACS Publications
Serving as the basis of cell life, interactions between nucleic acids and proteins play
essential roles in fundamental cellular processes. Aptamers are unique single-stranded …

Challenges and opportunities in cryo-EM single-particle analysis

D Lyumkis - Journal of Biological Chemistry, 2019 - ASBMB
Cryogenic electron microscopy (cryo-EM) enables structure determination of
macromolecular objects and their assemblies. Although the techniques have been …

Structure and gating mechanism of the α7 nicotinic acetylcholine receptor

CM Noviello, A Gharpure, N Mukhtasimova, R Cabuco… - Cell, 2021 - cell.com
The α7 nicotinic acetylcholine receptor plays critical roles in the central nervous system and
in the cholinergic inflammatory pathway. This ligand-gated ion channel assembles as a …

Structure of the bacterial ribosome at 2 Å resolution

ZL Watson, FR Ward, R Méheust, O Ad, A Schepartz… - elife, 2020 - elifesciences.org
Using cryo-electron microscopy (cryo-EM), we determined the structure of the Escherichia
coli 70S ribosome with a global resolution of 2.0 Å. The maps reveal unambiguous …

The CryoEM method MicroED as a powerful tool for small molecule structure determination

CG Jones, MW Martynowycz, J Hattne… - ACS Central …, 2018 - ACS Publications
In the many scientific endeavors that are driven by organic chemistry, unambiguous
identification of small molecules is of paramount importance. Over the past 50 years, NMR …

[PDF][PDF] Cryo-EM single-particle structure refinement and map calculation using Servalcat

K Yamashita, CM Palmer, T Burnley… - … Section D: Structural …, 2021 - journals.iucr.org
In 2020, cryo-EM single-particle analysis achieved true atomic resolution thanks to
technological developments in hardware and software. The number of high-resolution …

DeepMainmast: integrated protocol of protein structure modeling for cryo-EM with deep learning and structure prediction

G Terashi, X Wang, D Prasad, T Nakamura, D Kihara - Nature Methods, 2024 - nature.com
Three-dimensional structure modeling from maps is an indispensable step for studying
proteins and their complexes with cryogenic electron microscopy. Although the resolution of …

The cryo-EM method microcrystal electron diffraction (MicroED)

BL Nannenga, T Gonen - Nature methods, 2019 - nature.com
In 2013 we established a cryo-electron microscopy (cryo-EM) technique called microcrystal
electron diffraction (MicroED). Since that time, data collection and analysis schemes have …

Structure-based design of a soluble human cytomegalovirus glycoprotein B antigen stabilized in a prefusion-like conformation

MR Sponholtz, PO Byrne, AG Lee… - Proceedings of the …, 2024 - pnas.org
Human cytomegalovirus (HCMV) glycoprotein B (gB) is a class III membrane fusion protein
required for viral entry. HCMV vaccine candidates containing gB have demonstrated …

Radiation damage to biological macromolecules∗

EF Garman, M Weik - Current Opinion in Structural Biology, 2023 - Elsevier
In this review, we describe recent research developments into radiation damage effects in
macromolecular X-ray crystallography observed at synchrotrons and X-ray free electron …